No. words: 1380; after pruning: 1354


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.5 (1,1:527)  518  0.19 0.00 0.19  UCD005F_C08_BE403803LD01P012G01G071F1_060.ab1        1   528 (126)  C UCD005R_C08_BE403803LD01P012G01G071R1_060.ab1   (199)   527     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1  C UCD005R_C08_BE403803LD01P012G01G071R1_060.ab1   726 
  641    UCD005F_C08_BE403803LD01P012G01G071F1_060.ab1   443 
Contig length: old 852, new 852

Contig length: old 852, new 852
New start: 0