No. words: 1380; after pruning: 1354


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 11.3 (1,1:524)  508  0.38 0.19 0.19  UCD005F_E08_BE403803LD03P012G01G071F1_056.ab1        1   524 (128)  C UCD005R_E08_BE403803LD03P012G01G071R1_056.ab1   (204)   524     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1  C UCD005R_E08_BE403803LD03P012G01G071R1_056.ab1   728 
  343    UCD005F_E08_BE403803LD03P012G01G071F1_056.ab1   139 
  351  C UCD005R_E08_BE403803LD03P012G01G071R1_056.ab1   378 
  635    UCD005F_E08_BE403803LD03P012G01G071F1_056.ab1   431 
  663  C UCD005R_E08_BE403803LD03P012G01G071R1_056.ab1    66 
  675    UCD005F_E08_BE403803LD03P012G01G071F1_056.ab1   471 
  683  C UCD005R_E08_BE403803LD03P012G01G071R1_056.ab1    46 
  687    UCD005F_E08_BE403803LD03P012G01G071F1_056.ab1   483 
Contig length: old 855, new 856

Contig length: old 856, new 856
New start: 0