No. words: 1407; after pruning: 1381


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.1 (1,1:544)  524  0.92 0.00 0.18  UCD005F_F08_BE403803LD04P012G01G071F1_054.ab1        1   545 (192)  C UCD005R_F08_BE403803LD04P012G01G071R1_054.ab1   (126)   544     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1  C UCD005R_F08_BE403803LD04P012G01G071R1_054.ab1   670 
  264    UCD005F_F08_BE403803LD04P012G01G071F1_054.ab1   138 
  268  C UCD005R_F08_BE403803LD04P012G01G071R1_054.ab1   403 
  536    UCD005F_F08_BE403803LD04P012G01G071F1_054.ab1   410 
Contig length: old 862, new 863

Contig length: old 863, new 863
New start: 0