No. words: 1411; after pruning: 1385


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.1 (1,1:545)  521  0.92 0.18 0.18  UCD005F_G08_BE403803LD05P012G01G071F1_052.ab1        1   546 (128)  C UCD005R_G08_BE403803LD05P012G01G071R1_052.ab1   (191)   546     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1  C UCD005R_G08_BE403803LD05P012G01G071R1_052.ab1   737 
  636    UCD005F_G08_BE403803LD05P012G01G071F1_052.ab1   445 
  664  C UCD005R_G08_BE403803LD05P012G01G071R1_052.ab1    74 
  688    UCD005F_G08_BE403803LD05P012G01G071F1_052.ab1   497 
Contig length: old 865, new 865

Contig length: old 865, new 865
New start: 0