No. words: 1394; after pruning: 1368


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.7 (1,1:546)  536  0.37 0.18 0.00  UCD005F_H08_BE403803LD06P012G01G071F1_050.ab1        1   547 (107)  C UCD005R_H08_BE403803LD06P012G01G071R1_050.ab1   (192)   548     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1  C UCD005R_H08_BE403803LD06P012G01G071R1_050.ab1   740 
  609    UCD005F_H08_BE403803LD06P012G01G071F1_050.ab1   416 
  633  C UCD005R_H08_BE403803LD06P012G01G071R1_050.ab1   108 
  653    UCD005F_H08_BE403803LD06P012G01G071F1_050.ab1   460 
  685  C UCD005R_H08_BE403803LD06P012G01G071R1_050.ab1    56 
  689    UCD005F_H08_BE403803LD06P012G01G071F1_050.ab1   496 
Contig length: old 847, new 847

Contig length: old 847, new 847
New start: 0