No. words: 1373; after pruning: 1347


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.6 (1,1:523)  523  0.00 0.00 0.00  UCD005F_C09_BE403803LD09P012G01G071F1_075.ab1        1   524 (123)  C UCD005R_C09_BE403803LD09P012G01G071R1_075.ab1   (202)   524     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  264 nodes

 134 str. conn. components

Path
    1  C UCD005R_C09_BE403803LD09P012G01G071R1_075.ab1   726 
  602    UCD005F_C09_BE403803LD09P012G01G071F1_075.ab1   400 
Contig length: old 849, new 849

Contig length: old 849, new 849
New start: 0