No. words: 1403; after pruning: 1377


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.8 (1,1:541)  533  0.18 0.00 0.18  UCD005F_D09_BE403803LD10P012G01G071F1_073.ab1        1   542 (192)  C UCD005R_D09_BE403803LD10P012G01G071R1_073.ab1   (128)   541     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1  C UCD005R_D09_BE403803LD10P012G01G071R1_073.ab1   669 
  246    UCD005F_D09_BE403803LD10P012G01G071F1_073.ab1   118 
  250  C UCD005R_D09_BE403803LD10P012G01G071R1_073.ab1   420 
  286    UCD005F_D09_BE403803LD10P012G01G071F1_073.ab1   158 
  370  C UCD005R_D09_BE403803LD10P012G01G071R1_073.ab1   300 
  386    UCD005F_D09_BE403803LD10P012G01G071F1_073.ab1   258 
Contig length: old 861, new 862

Contig length: old 862, new 862
New start: 0