No. words: 1494; after pruning: 1442 Histogram of relative pair offsets, for read pairs with multiple alignments: Pass 1 Gap Score Pass: 1 #reads #contigs (not counting singlets) 1 4 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score Gap # merges # failures size Offset Pass 3 Gap Score Merge:(0) 0 0.0 7.0 (1,1:379) 370 0.00 0.26 0.26 UCD020F_H09_BE403803Sn26P025C02P012G071F2_065.ab1 1 380 (50) C UCD020R_H09_BE403803Sn26P025C02P012G071R2_065.ab1 (60) 380 1 * 0 -60 424 429 103 E 322- 424 Fail: (1) 103 0.0 6.4 (2,1:0) 317 0.31 0.00 0.00 UCD020R_H09_BE403803Sn26P025C02P012G071R2_065.ab1 59 380 (60) C UCD010F_H09_BE403803Sn26P025C02P012G071F1_065.ab1 (103) 322 1 Pass: 3 #reads #contigs (not counting singlets) 1 2 2 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score 0.0 1 1 Gap # merges # failures size 0 1 0 103 0 1 Offset 0 2 1 1 Pass 4 Gap Score Merge:(0) 103 0.0 6.4 (2,1:0) 317 0.31 0.00 0.00 UCD020R_H09_BE403803Sn26P025C02P012G071R2_065.ab1 59 380 (60) C UCD010F_H09_BE403803Sn26P025C02P012G071F1_065.ab1 (103) 322 1 Merge:(0) 3 -3.6 -0.6 (3,1:-4) 171 2.60 0.00 0.52 UCD020F_H09_BE403803Sn26P025C02P012G071F2_065.ab1 1 192 (238) UCD010R_H09_BE403803Sn26P025C02P012G071R1_065.ab1 6 196 (3) * Worst pair: offset 1 LLR breakdown: discreps: -6.5 (<20 part: -1.8 (#=5), >20:-4.7 (#=2); in HQ: -6.5, out HQ 0.0), match: 4.2 trail: -0.7 lead: -0.6 total: -3.6 168 2.58 0.00 1.03 UCD020R_H09_BE403803Sn26P025C02P012G071R2_065.ab1 188 381 (59) C UCD010R_H09_BE403803Sn26P025C02P012G071R1_065.ab1 (3) 196 5 * Pass: 4 #reads #contigs (not counting singlets) 4 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score 0.0 1 0 -3.6 1 0 Gap # merges # failures size 3 1 0 103 1 0 Offset 0 3 1 2 Read equivalence class histogram: 1 1 3 1 Chimera merges: Contig 1: 722 nodes 288 str. conn. components Path 1 C UCD020R_H09_BE403803Sn26P025C02P012G071R2_065.ab1 440 84 UCD010R_H09_BE403803Sn26P025C02P012G071R1_065.ab1 27 85 UCD020F_H09_BE403803Sn26P025C02P012G071F2_065.ab1 24 90 C UCD020R_H09_BE403803Sn26P025C02P012G071R2_065.ab1 351 100 UCD010F_H09_BE403803Sn26P025C02P012G071F1_065.ab1 40 103 UCD020F_H09_BE403803Sn26P025C02P012G071F2_065.ab1 42 106 C UCD020R_H09_BE403803Sn26P025C02P012G071R2_065.ab1 335 114 UCD020F_H09_BE403803Sn26P025C02P012G071F2_065.ab1 53 117 UCD010F_H09_BE403803Sn26P025C02P012G071F1_065.ab1 57 124 C UCD020R_H09_BE403803Sn26P025C02P012G071R2_065.ab1 317 132 UCD010F_H09_BE403803Sn26P025C02P012G071F1_065.ab1 72 136 C UCD020R_H09_BE403803Sn26P025C02P012G071R2_065.ab1 305 154 UCD020F_H09_BE403803Sn26P025C02P012G071F2_065.ab1 93 157 UCD010F_H09_BE403803Sn26P025C02P012G071F1_065.ab1 97 159 UCD020F_H09_BE403803Sn26P025C02P012G071F2_065.ab1 98 161 UCD010F_H09_BE403803Sn26P025C02P012G071F1_065.ab1 101 176 C UCD020R_H09_BE403803Sn26P025C02P012G071R2_065.ab1 265 180 UCD010F_H09_BE403803Sn26P025C02P012G071F1_065.ab1 120 184 C UCD020R_H09_BE403803Sn26P025C02P012G071R2_065.ab1 257 202 UCD020F_H09_BE403803Sn26P025C02P012G071F2_065.ab1 141 203 UCD010F_H09_BE403803Sn26P025C02P012G071F1_065.ab1 143 212 C UCD020R_H09_BE403803Sn26P025C02P012G071R2_065.ab1 229 241 UCD010F_H09_BE403803Sn26P025C02P012G071F1_065.ab1 181 251 UCD020F_H09_BE403803Sn26P025C02P012G071F2_065.ab1 190 262 C UCD020R_H09_BE403803Sn26P025C02P012G071R2_065.ab1 179 286 UCD020F_H09_BE403803Sn26P025C02P012G071F2_065.ab1 225 294 C UCD020R_H09_BE403803Sn26P025C02P012G071R2_065.ab1 147 298 UCD020F_H09_BE403803Sn26P025C02P012G071F2_065.ab1 237 299 UCD010F_H09_BE403803Sn26P025C02P012G071F1_065.ab1 239 300 C UCD020R_H09_BE403803Sn26P025C02P012G071R2_065.ab1 141 306 UCD020F_H09_BE403803Sn26P025C02P012G071F2_065.ab1 245 307 UCD010F_H09_BE403803Sn26P025C02P012G071F1_065.ab1 247 308 C UCD020R_H09_BE403803Sn26P025C02P012G071R2_065.ab1 133 314 UCD020F_H09_BE403803Sn26P025C02P012G071F2_065.ab1 253 334 C UCD020R_H09_BE403803Sn26P025C02P012G071R2_065.ab1 107 354 UCD020F_H09_BE403803Sn26P025C02P012G071F2_065.ab1 293 362 C UCD020R_H09_BE403803Sn26P025C02P012G071R2_065.ab1 79 366 UCD020F_H09_BE403803Sn26P025C02P012G071F2_065.ab1 305 374 C UCD020R_H09_BE403803Sn26P025C02P012G071R2_065.ab1 67 382 UCD020F_H09_BE403803Sn26P025C02P012G071F2_065.ab1 321 418 C UCD020R_H09_BE403803Sn26P025C02P012G071R2_065.ab1 23 422 UCD020F_H09_BE403803Sn26P025C02P012G071F2_065.ab1 361 Contig length: old 490, new 491 Contig length: old 491, new 491 New start: 0