No. words: 1691; after pruning: 1639 Histogram of relative pair offsets, for read pairs with multiple alignments: Pass 1 Gap Score Pass: 1 #reads #contigs (not counting singlets) 1 4 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score Gap # merges # failures size Offset Pass 3 Gap Score Merge:(0) 0 0.0 7.0 (1,1:378) 369 0.00 0.26 0.26 UCD020F_B10_BE403803Sn28P025C02P012G071F2_078.ab1 1 379 (48) C UCD020R_B10_BE403803Sn28P025C02P012G071R2_078.ab1 (59) 379 1 * 0 -71 413 414 93 E 321- 413 Fail: (1) 93 0.0 4.0 (2,1:12) 311 0.93 0.00 0.00 UCD020R_B10_BE403803Sn28P025C02P012G071R2_078.ab1 47 367 (71) C UCD010R_B10_BE403803Sn28P025C02P012G071R1_078.ab1 (93) 321 1 0 -64 411 421 129 E 283- 411 Fail: (1) 128 0.0 1.1 (2,1:5) 247 3.52 0.00 0.35 UCD020R_B10_BE403803Sn28P025C02P012G071R2_078.ab1 91 374 (64) C UCD010F_B10_BE403803Sn28P025C02P012G071F1_078.ab1 (129) 283 1 -411 -439 0 46 298 E -297- 0 Fail: (1) 298 -1.3 0.6 (2,1:380) 110 0.88 0.00 0.00 UCD020R_B10_BE403803Sn28P025C02P012G071R2_078.ab1 297 410 (28) UCD010F_B10_BE403803Sn28P025C02P012G071F1_078.ab1 299 412 (0) Merge:(0) 0 -0.6 -0.6 (1,1:-5) 291 6.39 0.74 1.23 UCD010R_B10_BE403803Sn28P025C02P012G071R1_078.ab1 1 407 (7) UCD010F_B10_BE403803Sn28P025C02P012G071F1_078.ab1 8 412 (0) * -426 -380 59 38 298 S -380- -83 Fail: (1) 298 -3.4 -1.3 (2,2:375) 74 1.20 0.00 1.20 UCD010F_B10_BE403803Sn28P025C02P012G071F1_078.ab1 299 381 (31) C UCD020F_B10_BE403803Sn28P025C02P012G071F2_078.ab1 (345) 82 1 Bypassed reads: contig1: none; contig2: none Worst pair: offset 0 LLR breakdown: discreps: -0.3 (<20 part: -0.3 (#=2), >20:0.0 (#=0); in HQ: -0.3, out HQ 0.0), match: 2.0 lead: -5.2 total: -3.5 87 2.13 0.00 0.00 UCD010R_B10_BE403803Sn28P025C02P012G071R1_078.ab1 321 414 (0) UCD020R_B10_BE403803Sn28P025C02P012G071R2_078.ab1 324 417 (21) Pass: 3 #reads #contigs (not counting singlets) 2 2 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score 0.0 1 2 -0.6 1 0 -1.3 0 1 -3.4 0 1 Gap # merges # failures size 0 2 0 93 0 1 128 0 1 298 0 2 Offset 0 7 1 4 Pass 4 Gap Score Merge:(0) 93 0.0 4.0 (2,2:-12) 311 0.93 0.00 0.00 UCD010R_B10_BE403803Sn28P025C02P012G071R1_078.ab1 1 321 (93) C UCD020R_B10_BE403803Sn28P025C02P012G071R2_078.ab1 (71) 367 47 Pass: 4 #reads #contigs (not counting singlets) 4 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score 0.0 1 0 Gap # merges # failures size 93 1 0 Offset 0 1 1 1 2 1 3 1 Read equivalence class histogram: 4 1 Chimera merges: Contig 1: 862 nodes 241 str. conn. components Path 1 C UCD020R_B10_BE403803Sn28P025C02P012G071R2_078.ab1 438 73 UCD020F_B10_BE403803Sn28P025C02P012G071F2_078.ab1 13 79 C UCD020R_B10_BE403803Sn28P025C02P012G071R2_078.ab1 360 81 UCD020F_B10_BE403803Sn28P025C02P012G071F2_078.ab1 21 84 UCD010F_B10_BE403803Sn28P025C02P012G071F1_078.ab1 19 87 UCD020F_B10_BE403803Sn28P025C02P012G071F2_078.ab1 27 91 C UCD020R_B10_BE403803Sn28P025C02P012G071R2_078.ab1 348 95 UCD020F_B10_BE403803Sn28P025C02P012G071F2_078.ab1 35 96 UCD010F_B10_BE403803Sn28P025C02P012G071F1_078.ab1 31 111 UCD020F_B10_BE403803Sn28P025C02P012G071F2_078.ab1 51 116 UCD010F_B10_BE403803Sn28P025C02P012G071F1_078.ab1 51 127 C UCD020R_B10_BE403803Sn28P025C02P012G071R2_078.ab1 312 129 UCD020F_B10_BE403803Sn28P025C02P012G071F2_078.ab1 69 132 UCD010F_B10_BE403803Sn28P025C02P012G071F1_078.ab1 67 143 C UCD020R_B10_BE403803Sn28P025C02P012G071R2_078.ab1 296 151 UCD020F_B10_BE403803Sn28P025C02P012G071F2_078.ab1 91 152 UCD010F_B10_BE403803Sn28P025C02P012G071F1_078.ab1 87 156 UCD020F_B10_BE403803Sn28P025C02P012G071F2_078.ab1 96 157 C UCD020R_B10_BE403803Sn28P025C02P012G071R2_078.ab1 282 159 UCD010R_B10_BE403803Sn28P025C02P012G071R1_078.ab1 88 160 UCD010F_B10_BE403803Sn28P025C02P012G071F1_078.ab1 95 172 UCD010R_B10_BE403803Sn28P025C02P012G071R1_078.ab1 101 180 UCD010F_B10_BE403803Sn28P025C02P012G071F1_078.ab1 115 183 UCD010R_B10_BE403803Sn28P025C02P012G071R1_078.ab1 112 188 UCD020F_B10_BE403803Sn28P025C02P012G071F2_078.ab1 128 191 C UCD020R_B10_BE403803Sn28P025C02P012G071R2_078.ab1 248 201 UCD020F_B10_BE403803Sn28P025C02P012G071F2_078.ab1 141 208 UCD010F_B10_BE403803Sn28P025C02P012G071F1_078.ab1 143 211 UCD010R_B10_BE403803Sn28P025C02P012G071R1_078.ab1 140 227 UCD020F_B10_BE403803Sn28P025C02P012G071F2_078.ab1 167 229 C UCD020R_B10_BE403803Sn28P025C02P012G071R2_078.ab1 210 231 UCD020F_B10_BE403803Sn28P025C02P012G071F2_078.ab1 171 236 UCD010R_B10_BE403803Sn28P025C02P012G071R1_078.ab1 165 240 UCD020F_B10_BE403803Sn28P025C02P012G071F2_078.ab1 180 256 UCD010R_B10_BE403803Sn28P025C02P012G071R1_078.ab1 185 259 UCD020F_B10_BE403803Sn28P025C02P012G071F2_078.ab1 199 275 UCD010R_B10_BE403803Sn28P025C02P012G071R1_078.ab1 204 291 C UCD020R_B10_BE403803Sn28P025C02P012G071R2_078.ab1 148 295 UCD020F_B10_BE403803Sn28P025C02P012G071F2_078.ab1 235 297 C UCD020R_B10_BE403803Sn28P025C02P012G071R2_078.ab1 142 311 UCD020F_B10_BE403803Sn28P025C02P012G071F2_078.ab1 251 361 C UCD020R_B10_BE403803Sn28P025C02P012G071R2_078.ab1 78 365 UCD020F_B10_BE403803Sn28P025C02P012G071F2_078.ab1 305 369 C UCD020R_B10_BE403803Sn28P025C02P012G071R2_078.ab1 70 371 UCD020F_B10_BE403803Sn28P025C02P012G071F2_078.ab1 311 373 C UCD020R_B10_BE403803Sn28P025C02P012G071R2_078.ab1 66 377 UCD020F_B10_BE403803Sn28P025C02P012G071F2_078.ab1 317 385 C UCD020R_B10_BE403803Sn28P025C02P012G071R2_078.ab1 54 389 UCD020F_B10_BE403803Sn28P025C02P012G071F2_078.ab1 329 413 C UCD020R_B10_BE403803Sn28P025C02P012G071R2_078.ab1 26 417 UCD020F_B10_BE403803Sn28P025C02P012G071F2_078.ab1 357 Contig length: old 486, new 487 Contig length: old 487, new 487 New start: 0