No. words: 1555; after pruning: 1503 Histogram of relative pair offsets, for read pairs with multiple alignments: Pass 1 Gap Score Pass: 1 #reads #contigs (not counting singlets) 1 4 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score Gap # merges # failures size Offset Pass 3 Gap Score Merge:(0) 0 0.0 7.5 (1,1:-2) 339 0.29 0.00 0.00 UCD010F_C10_BE403803Sn29P025C02P012G071F1_076.ab1 1 344 (0) UCD020F_C10_BE403803Sn29P025C02P012G071F2_076.ab1 3 346 (86) * Merge:(0) 0 0.0 7.3 (2,1:377) 332 0.59 0.00 0.00 UCD010F_C10_BE403803Sn29P025C02P012G071F1_076.ab1 1 340 (4) C UCD020R_C10_BE403803Sn29P025C02P012G071R2_076.ab1 (58) 378 39 * 0 -151 342 336 140 E 197- 336 Fail: (1) 140 0.0 3.0 (3,1:93) 189 1.02 0.00 0.00 UCD020R_C10_BE403803Sn29P025C02P012G071R2_076.ab1 89 285 (151) C UCD010R_C10_BE403803Sn29P025C02P012G071R1_076.ab1 (146) 197 1 Pass: 3 #reads #contigs (not counting singlets) 1 1 3 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score 0.0 2 1 Gap # merges # failures size 0 2 0 140 0 1 Offset 0 6 Pass 4 Gap Score 0 -151 342 336 140 E 197- 336 Fail: (1) 140 0.0 3.0 (3,1:93) 189 1.02 0.00 0.00 UCD020R_C10_BE403803Sn29P025C02P012G071R2_076.ab1 89 285 (151) C UCD010R_C10_BE403803Sn29P025C02P012G071R1_076.ab1 (146) 197 1 -342 -353 0 134 220 E -219- 0 Fail: (1) 220 0.0 1.5 (3,1:295) 117 0.00 0.82 0.00 UCD020R_C10_BE403803Sn29P025C02P012G071R2_076.ab1 304 425 (11) UCD010R_C10_BE403803Sn29P025C02P012G071R1_076.ab1 221 343 (0) Pass: 4 #reads #contigs (not counting singlets) 1 1 3 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score 0.0 0 2 Gap # merges # failures size 140 0 1 220 0 1 Offset 0 4 Read equivalence class histogram: 1 1 3 1 Chimera merges: Merge:(0) 140 0.0 3.9 (3,1:93) 189 1.02 0.00 0.00 UCD020R_C10_BE403803Sn29P025C02P012G071R2_076.ab1 89 285 (151) C UCD010R_C10_BE403803Sn29P025C02P012G071R1_076.ab1 (146) 197 1 Contig 1: 780 nodes 216 str. conn. components Path 1 C UCD020R_C10_BE403803Sn29P025C02P012G071R2_076.ab1 436 66 UCD020F_C10_BE403803Sn29P025C02P012G071F2_076.ab1 10 69 C UCD020R_C10_BE403803Sn29P025C02P012G071R2_076.ab1 368 73 UCD020F_C10_BE403803Sn29P025C02P012G071F2_076.ab1 17 89 C UCD020R_C10_BE403803Sn29P025C02P012G071R2_076.ab1 348 94 UCD020F_C10_BE403803Sn29P025C02P012G071F2_076.ab1 38 98 UCD010F_C10_BE403803Sn29P025C02P012G071F1_076.ab1 40 106 C UCD020R_C10_BE403803Sn29P025C02P012G071R2_076.ab1 331 109 UCD020F_C10_BE403803Sn29P025C02P012G071F2_076.ab1 53 117 C UCD020R_C10_BE403803Sn29P025C02P012G071R2_076.ab1 320 118 UCD010F_C10_BE403803Sn29P025C02P012G071F1_076.ab1 60 122 UCD020F_C10_BE403803Sn29P025C02P012G071F2_076.ab1 66 125 C UCD020R_C10_BE403803Sn29P025C02P012G071R2_076.ab1 312 129 UCD020F_C10_BE403803Sn29P025C02P012G071F2_076.ab1 73 134 C UCD020R_C10_BE403803Sn29P025C02P012G071R2_076.ab1 303 150 UCD010F_C10_BE403803Sn29P025C02P012G071F1_076.ab1 92 155 UCD020F_C10_BE403803Sn29P025C02P012G071F2_076.ab1 99 157 C UCD020R_C10_BE403803Sn29P025C02P012G071R2_076.ab1 280 162 UCD010F_C10_BE403803Sn29P025C02P012G071F1_076.ab1 104 167 C UCD020R_C10_BE403803Sn29P025C02P012G071R2_076.ab1 270 171 UCD010F_C10_BE403803Sn29P025C02P012G071F1_076.ab1 113 174 C UCD020R_C10_BE403803Sn29P025C02P012G071R2_076.ab1 263 185 UCD020F_C10_BE403803Sn29P025C02P012G071F2_076.ab1 129 190 UCD010F_C10_BE403803Sn29P025C02P012G071F1_076.ab1 132 191 C UCD020R_C10_BE403803Sn29P025C02P012G071R2_076.ab1 246 205 UCD020F_C10_BE403803Sn29P025C02P012G071F2_076.ab1 149 209 C UCD020R_C10_BE403803Sn29P025C02P012G071R2_076.ab1 228 218 UCD010F_C10_BE403803Sn29P025C02P012G071F1_076.ab1 160 219 UCD020F_C10_BE403803Sn29P025C02P012G071F2_076.ab1 163 221 C UCD020R_C10_BE403803Sn29P025C02P012G071R2_076.ab1 216 222 UCD010F_C10_BE403803Sn29P025C02P012G071F1_076.ab1 164 226 UCD020F_C10_BE403803Sn29P025C02P012G071F2_076.ab1 170 229 C UCD020R_C10_BE403803Sn29P025C02P012G071R2_076.ab1 208 230 UCD020F_C10_BE403803Sn29P025C02P012G071F2_076.ab1 174 251 UCD010F_C10_BE403803Sn29P025C02P012G071F1_076.ab1 193 258 UCD020F_C10_BE403803Sn29P025C02P012G071F2_076.ab1 202 291 C UCD020R_C10_BE403803Sn29P025C02P012G071R2_076.ab1 146 293 UCD020F_C10_BE403803Sn29P025C02P012G071F2_076.ab1 237 295 C UCD020R_C10_BE403803Sn29P025C02P012G071R2_076.ab1 142 302 UCD020F_C10_BE403803Sn29P025C02P012G071F2_076.ab1 246 305 C UCD020R_C10_BE403803Sn29P025C02P012G071R2_076.ab1 132 306 UCD010F_C10_BE403803Sn29P025C02P012G071F1_076.ab1 248 307 UCD020F_C10_BE403803Sn29P025C02P012G071F2_076.ab1 251 372 UCD010F_C10_BE403803Sn29P025C02P012G071F1_076.ab1 314 376 UCD020F_C10_BE403803Sn29P025C02P012G071F2_076.ab1 320 Contig length: old 494, new 488 Contig length: old 488, new 488 New start: 0