No. words: 1181; after pruning: 1155


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 10.1 (1,1:538)  533  0.19 0.00 0.00  UCD005F_E07_BE403803TU01P012G01G071F1_055.ab1        3   539 (51)  C UCD005R_E07_BE403803TU01P012G01G071R1_055.ab1   (54)   537     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1  C UCD005R_E07_BE403803TU01P012G01G071R1_055.ab1   591 
   62    UCD005F_E07_BE403803TU01P012G01G071F1_055.ab1    10 
   94  C UCD005R_E07_BE403803TU01P012G01G071R1_055.ab1   498 
   98    UCD005F_E07_BE403803TU01P012G01G071F1_055.ab1    46 
  106  C UCD005R_E07_BE403803TU01P012G01G071R1_055.ab1   486 
  110    UCD005F_E07_BE403803TU01P012G01G071F1_055.ab1    58 
  114  C UCD005R_E07_BE403803TU01P012G01G071R1_055.ab1   478 
  122    UCD005F_E07_BE403803TU01P012G01G071F1_055.ab1    70 
  130  C UCD005R_E07_BE403803TU01P012G01G071R1_055.ab1   462 
  142    UCD005F_E07_BE403803TU01P012G01G071F1_055.ab1    90 
  210  C UCD005R_E07_BE403803TU01P012G01G071R1_055.ab1   382 
  214    UCD005F_E07_BE403803TU01P012G01G071F1_055.ab1   162 
  378  C UCD005R_E07_BE403803TU01P012G01G071R1_055.ab1   214 
  382    UCD005F_E07_BE403803TU01P012G01G071F1_055.ab1   330 
  482  C UCD005R_E07_BE403803TU01P012G01G071R1_055.ab1   110 
  486    UCD005F_E07_BE403803TU01P012G01G071F1_055.ab1   434 
  514  C UCD005R_E07_BE403803TU01P012G01G071R1_055.ab1    78 
  522    UCD005F_E07_BE403803TU01P012G01G071F1_055.ab1   470 
  534  C UCD005R_E07_BE403803TU01P012G01G071R1_055.ab1    58 
  542    UCD005F_E07_BE403803TU01P012G01G071F1_055.ab1   490 
  566  C UCD005R_E07_BE403803TU01P012G01G071R1_055.ab1    26 
  570    UCD005F_E07_BE403803TU01P012G01G071F1_055.ab1   518 
Contig length: old 642, new 642

Contig length: old 642, new 642
New start: 0