No. words: 1162; after pruning: 1136


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.8 (1,1:535)  530  0.00 0.00 0.19  UCD005F_F07_BE403803TU02P012G01G071F1_053.ab1        1   536 (38)  C UCD005R_F07_BE403803TU02P012G01G071R1_053.ab1   (53)   535     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1  C UCD005R_F07_BE403803TU02P012G01G071R1_053.ab1   588 
   61    UCD005F_F07_BE403803TU02P012G01G071F1_053.ab1     8 
   93  C UCD005R_F07_BE403803TU02P012G01G071R1_053.ab1   496 
   97    UCD005F_F07_BE403803TU02P012G01G071F1_053.ab1    44 
  129  C UCD005R_F07_BE403803TU02P012G01G071R1_053.ab1   460 
  145    UCD005F_F07_BE403803TU02P012G01G071F1_053.ab1    92 
  185  C UCD005R_F07_BE403803TU02P012G01G071R1_053.ab1   404 
  189    UCD005F_F07_BE403803TU02P012G01G071F1_053.ab1   136 
  305  C UCD005R_F07_BE403803TU02P012G01G071R1_053.ab1   284 
  385    UCD005F_F07_BE403803TU02P012G01G071F1_053.ab1   332 
  393  C UCD005R_F07_BE403803TU02P012G01G071R1_053.ab1   196 
  425    UCD005F_F07_BE403803TU02P012G01G071F1_053.ab1   372 
  433  C UCD005R_F07_BE403803TU02P012G01G071R1_053.ab1   156 
  489    UCD005F_F07_BE403803TU02P012G01G071F1_053.ab1   436 
  493  C UCD005R_F07_BE403803TU02P012G01G071R1_053.ab1    96 
  505    UCD005F_F07_BE403803TU02P012G01G071F1_053.ab1   452 
  513  C UCD005R_F07_BE403803TU02P012G01G071R1_053.ab1    76 
  529    UCD005F_F07_BE403803TU02P012G01G071F1_053.ab1   476 
  537  C UCD005R_F07_BE403803TU02P012G01G071R1_053.ab1    52 
  573    UCD005F_F07_BE403803TU02P012G01G071F1_053.ab1   520 
Contig length: old 626, new 627

Contig length: old 627, new 627
New start: 0