No. words: 1179; after pruning: 1140 Histogram of relative pair offsets, for read pairs with multiple alignments: Pass 1 Gap Score Pass: 1 #reads #contigs (not counting singlets) 1 3 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score Gap # merges # failures size Offset Pass 3 Gap Score Merge:(0) 0 0.0 6.8 (1,1:386) 377 0.00 0.00 0.52 UCD020F_A08_BE403803Ta11P025C02P012G071F2_064.ab1 1 388 (42) C UCD020R_A08_BE403803Ta11P025C02P012G071R2_064.ab1 (45) 386 1 * Merge:(0) 0 0.0 6.7 (2,1:35) 311 0.63 0.00 0.00 UCD020R_A08_BE403803Ta11P025C02P012G071R2_064.ab1 35 352 (79) C UCD010R_A08_BE403803Ta11P025C02P012G071R1_064.ab1 (0) 318 1 * Pass: 3 #reads #contigs (not counting singlets) 3 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score 0.0 2 0 Gap # merges # failures size 0 2 0 Offset 0 2 1 1 Pass 4 Gap Score Pass: 4 #reads #contigs (not counting singlets) 3 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score Gap # merges # failures size Offset Read equivalence class histogram: 3 1 Chimera merges: Contig 1: 496 nodes 175 str. conn. components Path 1 C UCD020R_A08_BE403803Ta11P025C02P012G071R2_064.ab1 431 69 UCD020F_A08_BE403803Ta11P025C02P012G071F2_064.ab1 24 77 C UCD020R_A08_BE403803Ta11P025C02P012G071R2_064.ab1 355 87 UCD020F_A08_BE403803Ta11P025C02P012G071F2_064.ab1 42 91 C UCD020R_A08_BE403803Ta11P025C02P012G071R2_064.ab1 341 95 UCD020F_A08_BE403803Ta11P025C02P012G071F2_064.ab1 50 101 C UCD020R_A08_BE403803Ta11P025C02P012G071R2_064.ab1 331 105 UCD020F_A08_BE403803Ta11P025C02P012G071F2_064.ab1 60 111 C UCD020R_A08_BE403803Ta11P025C02P012G071R2_064.ab1 321 115 UCD020F_A08_BE403803Ta11P025C02P012G071F2_064.ab1 70 121 C UCD020R_A08_BE403803Ta11P025C02P012G071R2_064.ab1 311 125 UCD020F_A08_BE403803Ta11P025C02P012G071F2_064.ab1 80 127 C UCD020R_A08_BE403803Ta11P025C02P012G071R2_064.ab1 305 139 UCD020F_A08_BE403803Ta11P025C02P012G071F2_064.ab1 94 145 C UCD020R_A08_BE403803Ta11P025C02P012G071R2_064.ab1 287 147 UCD020F_A08_BE403803Ta11P025C02P012G071F2_064.ab1 102 155 UCD010R_A08_BE403803Ta11P025C02P012G071R1_064.ab1 76 163 C UCD020R_A08_BE403803Ta11P025C02P012G071R2_064.ab1 269 165 UCD020F_A08_BE403803Ta11P025C02P012G071F2_064.ab1 120 175 C UCD020R_A08_BE403803Ta11P025C02P012G071R2_064.ab1 257 187 UCD020F_A08_BE403803Ta11P025C02P012G071F2_064.ab1 142 191 C UCD020R_A08_BE403803Ta11P025C02P012G071R2_064.ab1 241 203 UCD010R_A08_BE403803Ta11P025C02P012G071R1_064.ab1 124 207 UCD020F_A08_BE403803Ta11P025C02P012G071F2_064.ab1 162 209 C UCD020R_A08_BE403803Ta11P025C02P012G071R2_064.ab1 223 213 UCD020F_A08_BE403803Ta11P025C02P012G071F2_064.ab1 168 215 C UCD020R_A08_BE403803Ta11P025C02P012G071R2_064.ab1 217 217 UCD020F_A08_BE403803Ta11P025C02P012G071F2_064.ab1 172 219 C UCD020R_A08_BE403803Ta11P025C02P012G071R2_064.ab1 213 223 UCD010R_A08_BE403803Ta11P025C02P012G071R1_064.ab1 144 255 UCD020F_A08_BE403803Ta11P025C02P012G071F2_064.ab1 210 283 C UCD020R_A08_BE403803Ta11P025C02P012G071R2_064.ab1 149 289 UCD020F_A08_BE403803Ta11P025C02P012G071F2_064.ab1 244 291 C UCD020R_A08_BE403803Ta11P025C02P012G071R2_064.ab1 141 295 UCD020F_A08_BE403803Ta11P025C02P012G071F2_064.ab1 250 345 C UCD020R_A08_BE403803Ta11P025C02P012G071R2_064.ab1 87 351 UCD020F_A08_BE403803Ta11P025C02P012G071F2_064.ab1 306 359 C UCD020R_A08_BE403803Ta11P025C02P012G071R2_064.ab1 73 363 UCD020F_A08_BE403803Ta11P025C02P012G071F2_064.ab1 318 397 C UCD020R_A08_BE403803Ta11P025C02P012G071R2_064.ab1 35 409 UCD020F_A08_BE403803Ta11P025C02P012G071F2_064.ab1 364 Contig length: old 474, new 475 Contig length: old 475, new 475 New start: 0