No. words: 1502; after pruning: 1450 Histogram of relative pair offsets, for read pairs with multiple alignments: Pass 1 Gap Score Pass: 1 #reads #contigs (not counting singlets) 1 4 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score Gap # merges # failures size Offset Pass 3 Gap Score Merge:(0) 0 0.0 7.2 (1,1:393) 384 0.00 0.00 0.51 UCD020F_C08_BE403803Ta13P025C02P012G071F2_060.ab1 1 395 (44) C UCD020R_C08_BE403803Ta13P025C02P012G071R2_060.ab1 (37) 393 1 * 0 -45 424 429 105 E 320- 424 Fail: (1) 104 0.0 6.9 (2,1:9) 314 0.00 0.00 0.31 UCD020R_C08_BE403803Ta13P025C02P012G071R2_060.ab1 65 385 (45) C UCD010R_C08_BE403803Ta13P025C02P012G071R1_060.ab1 (105) 320 1 Merge:(0) 0 0.0 4.2 (2,1:8) 198 0.48 0.00 0.48 UCD020F_C08_BE403803Ta13P025C02P012G071F2_060.ab1 8 216 (223) UCD010F_C08_BE403803Ta13P025C02P012G071F1_060.ab1 1 208 (0) * 0 -45 424 429 105 E 320- 424 Fail: (1) 104 0.0 4.0 (3,1:9) 193 0.48 0.48 0.48 UCD010F_C08_BE403803Ta13P025C02P012G071F1_060.ab1 2 208 (0) UCD010R_C08_BE403803Ta13P025C02P012G071R1_060.ab1 1 207 (218) * Pass: 3 #reads #contigs (not counting singlets) 1 1 3 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score 0.0 2 2 Gap # merges # failures size 0 2 0 104 0 2 Offset 0 5 1 3 Pass 4 Gap Score Merge:(0) 104 0.0 6.9 (3,1:9) 314 0.00 0.00 0.31 UCD020R_C08_BE403803Ta13P025C02P012G071R2_060.ab1 65 385 (45) C UCD010R_C08_BE403803Ta13P025C02P012G071R1_060.ab1 (105) 320 1 Pass: 4 #reads #contigs (not counting singlets) 4 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score 0.0 1 0 Gap # merges # failures size 104 1 0 Offset 0 2 1 1 Read equivalence class histogram: 4 1 Chimera merges: Contig 1: 772 nodes 302 str. conn. components Path 1 C UCD020R_C08_BE403803Ta13P025C02P012G071R2_060.ab1 430 48 UCD020F_C08_BE403803Ta13P025C02P012G071F2_060.ab1 11 49 C UCD020R_C08_BE403803Ta13P025C02P012G071R2_060.ab1 382 58 UCD010R_C08_BE403803Ta13P025C02P012G071R1_060.ab1 12 67 UCD020F_C08_BE403803Ta13P025C02P012G071F2_060.ab1 30 75 UCD010R_C08_BE403803Ta13P025C02P012G071R1_060.ab1 29 78 C UCD020R_C08_BE403803Ta13P025C02P012G071R2_060.ab1 353 81 UCD010R_C08_BE403803Ta13P025C02P012G071R1_060.ab1 35 85 UCD010F_C08_BE403803Ta13P025C02P012G071F1_060.ab1 40 89 UCD020F_C08_BE403803Ta13P025C02P012G071F2_060.ab1 52 91 UCD010R_C08_BE403803Ta13P025C02P012G071R1_060.ab1 45 93 UCD010F_C08_BE403803Ta13P025C02P012G071F1_060.ab1 48 108 C UCD020R_C08_BE403803Ta13P025C02P012G071R2_060.ab1 323 112 UCD010F_C08_BE403803Ta13P025C02P012G071F1_060.ab1 67 120 C UCD020R_C08_BE403803Ta13P025C02P012G071R2_060.ab1 311 137 UCD010R_C08_BE403803Ta13P025C02P012G071R1_060.ab1 91 142 C UCD020R_C08_BE403803Ta13P025C02P012G071R2_060.ab1 289 145 UCD010F_C08_BE403803Ta13P025C02P012G071F1_060.ab1 100 157 UCD010R_C08_BE403803Ta13P025C02P012G071R1_060.ab1 111 161 C UCD020R_C08_BE403803Ta13P025C02P012G071R2_060.ab1 270 162 UCD010R_C08_BE403803Ta13P025C02P012G071R1_060.ab1 116 165 UCD020F_C08_BE403803Ta13P025C02P012G071F2_060.ab1 128 173 C UCD020R_C08_BE403803Ta13P025C02P012G071R2_060.ab1 258 186 UCD010R_C08_BE403803Ta13P025C02P012G071R1_060.ab1 140 187 UCD020F_C08_BE403803Ta13P025C02P012G071F2_060.ab1 150 195 UCD010R_C08_BE403803Ta13P025C02P012G071R1_060.ab1 149 197 C UCD020R_C08_BE403803Ta13P025C02P012G071R2_060.ab1 234 202 UCD010R_C08_BE403803Ta13P025C02P012G071R1_060.ab1 156 205 C UCD020R_C08_BE403803Ta13P025C02P012G071R2_060.ab1 226 217 UCD010R_C08_BE403803Ta13P025C02P012G071R1_060.ab1 171 218 C UCD020R_C08_BE403803Ta13P025C02P012G071R2_060.ab1 213 225 UCD010R_C08_BE403803Ta13P025C02P012G071R1_060.ab1 179 242 C UCD020R_C08_BE403803Ta13P025C02P012G071R2_060.ab1 189 249 UCD020F_C08_BE403803Ta13P025C02P012G071F2_060.ab1 212 281 C UCD020R_C08_BE403803Ta13P025C02P012G071R2_060.ab1 150 293 UCD020F_C08_BE403803Ta13P025C02P012G071F2_060.ab1 256 321 C UCD020R_C08_BE403803Ta13P025C02P012G071R2_060.ab1 110 325 UCD020F_C08_BE403803Ta13P025C02P012G071F2_060.ab1 288 333 C UCD020R_C08_BE403803Ta13P025C02P012G071R2_060.ab1 98 341 UCD020F_C08_BE403803Ta13P025C02P012G071F2_060.ab1 304 345 C UCD020R_C08_BE403803Ta13P025C02P012G071R2_060.ab1 86 349 UCD020F_C08_BE403803Ta13P025C02P012G071F2_060.ab1 312 353 C UCD020R_C08_BE403803Ta13P025C02P012G071R2_060.ab1 78 365 UCD020F_C08_BE403803Ta13P025C02P012G071F2_060.ab1 328 373 C UCD020R_C08_BE403803Ta13P025C02P012G071R2_060.ab1 58 377 UCD020F_C08_BE403803Ta13P025C02P012G071F2_060.ab1 340 397 C UCD020R_C08_BE403803Ta13P025C02P012G071R2_060.ab1 34 409 UCD020F_C08_BE403803Ta13P025C02P012G071F2_060.ab1 372 Contig length: old 475, new 476 Contig length: old 476, new 476 New start: 0