No. words: 1022; after pruning: 996


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:459)  444  0.22 0.22 0.43  UCD014F_D01_BE403803Ta14P025H01P012G071F1_009.ab1        1   461 (54)  C UCD014R_D01_BE403803Ta14P025H01P012G071R1_009.ab1   (47)   460     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C UCD014R_D01_BE403803Ta14P025H01P012G071R1_009.ab1   507 
   97    UCD014F_D01_BE403803Ta14P025H01P012G071F1_009.ab1    49 
  105  C UCD014R_D01_BE403803Ta14P025H01P012G071R1_009.ab1   403 
  113    UCD014F_D01_BE403803Ta14P025H01P012G071F1_009.ab1    65 
  117  C UCD014R_D01_BE403803Ta14P025H01P012G071R1_009.ab1   391 
  121    UCD014F_D01_BE403803Ta14P025H01P012G071F1_009.ab1    73 
  129  C UCD014R_D01_BE403803Ta14P025H01P012G071R1_009.ab1   379 
  137    UCD014F_D01_BE403803Ta14P025H01P012G071F1_009.ab1    89 
  189  C UCD014R_D01_BE403803Ta14P025H01P012G071R1_009.ab1   319 
  229    UCD014F_D01_BE403803Ta14P025H01P012G071F1_009.ab1   181 
  257  C UCD014R_D01_BE403803Ta14P025H01P012G071R1_009.ab1   251 
  301    UCD014F_D01_BE403803Ta14P025H01P012G071F1_009.ab1   253 
  317  C UCD014R_D01_BE403803Ta14P025H01P012G071R1_009.ab1   191 
  345    UCD014F_D01_BE403803Ta14P025H01P012G071F1_009.ab1   297 
  361  C UCD014R_D01_BE403803Ta14P025H01P012G071R1_009.ab1   147 
  373    UCD014F_D01_BE403803Ta14P025H01P012G071F1_009.ab1   325 
  381  C UCD014R_D01_BE403803Ta14P025H01P012G071R1_009.ab1   127 
  401    UCD014F_D01_BE403803Ta14P025H01P012G071F1_009.ab1   353 
  405  C UCD014R_D01_BE403803Ta14P025H01P012G071R1_009.ab1   103 
  409    UCD014F_D01_BE403803Ta14P025H01P012G071F1_009.ab1   361 
  425  C UCD014R_D01_BE403803Ta14P025H01P012G071R1_009.ab1    83 
  429    UCD014F_D01_BE403803Ta14P025H01P012G071F1_009.ab1   381 
  433  C UCD014R_D01_BE403803Ta14P025H01P012G071R1_009.ab1    75 
  457    UCD014F_D01_BE403803Ta14P025H01P012G071F1_009.ab1   409 
Contig length: old 562, new 563

Contig length: old 563, new 563
New start: 0