No. words: 1004; after pruning: 978


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.5 (1,1:437)  433  0.00 0.23 0.00  UCD014F_E01_BE403803Ta15P025H01P012G071F1_007.ab1        1   438 (76)  C UCD014R_E01_BE403803Ta15P025H01P012G071R1_007.ab1   (51)   439     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C UCD014R_E01_BE403803Ta15P025H01P012G071R1_007.ab1   490 
   93    UCD014F_E01_BE403803Ta15P025H01P012G071F1_007.ab1    41 
  109  C UCD014R_E01_BE403803Ta15P025H01P012G071R1_007.ab1   382 
  121    UCD014F_E01_BE403803Ta15P025H01P012G071F1_007.ab1    69 
  133  C UCD014R_E01_BE403803Ta15P025H01P012G071R1_007.ab1   358 
  141    UCD014F_E01_BE403803Ta15P025H01P012G071F1_007.ab1    89 
  161  C UCD014R_E01_BE403803Ta15P025H01P012G071R1_007.ab1   330 
  177    UCD014F_E01_BE403803Ta15P025H01P012G071F1_007.ab1   125 
  185  C UCD014R_E01_BE403803Ta15P025H01P012G071R1_007.ab1   306 
  205    UCD014F_E01_BE403803Ta15P025H01P012G071F1_007.ab1   153 
  225  C UCD014R_E01_BE403803Ta15P025H01P012G071R1_007.ab1   266 
  305    UCD014F_E01_BE403803Ta15P025H01P012G071F1_007.ab1   253 
  365  C UCD014R_E01_BE403803Ta15P025H01P012G071R1_007.ab1   126 
  377    UCD014F_E01_BE403803Ta15P025H01P012G071F1_007.ab1   325 
Contig length: old 566, new 566

Contig length: old 566, new 566
New start: 0