No. words: 1758; after pruning: 1706 Histogram of relative pair offsets, for read pairs with multiple alignments: Pass 1 Gap Score -430 -385 0 58 80 E -79- 0 Fail: (1) 80 0.0 3.7 (1,1:385) 294 0.65 0.33 0.00 UCD010R_G08_BE403803Ta17P025C02P012G071R1_052.ab1 1 306 (138) C UCD020R_G08_BE403803Ta17P025C02P012G071R2_052.ab1 (44) 387 81 Pass: 1 #reads #contigs (not counting singlets) 1 4 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score 0.0 0 1 Gap # merges # failures size 80 0 1 Offset 1 1 Pass 3 Gap Score Merge:(0) 0 0.0 7.1 (1,1:389) 380 0.00 0.00 0.51 UCD020F_G08_BE403803Ta17P025C02P012G071F2_052.ab1 1 391 (39) C UCD020R_G08_BE403803Ta17P025C02P012G071R2_052.ab1 (42) 389 1 * Merge:(0) 4 0.0 5.3 (1,1:-7) 367 4.56 0.23 0.23 UCD010R_G08_BE403803Ta17P025C02P012G071R1_052.ab1 1 439 (5) UCD010F_G08_BE403803Ta17P025C02P012G071F1_052.ab1 9 447 (6) * -41 -5 429 447 92 E 338- 429 Fail: (1) 92 0.0 4.3 (2,2:-2) 317 1.46 0.29 0.29 UCD010F_G08_BE403803Ta17P025C02P012G071F1_052.ab1 1 343 (110) C UCD020R_G08_BE403803Ta17P025C02P012G071R2_052.ab1 (36) 395 53 -429 -397 41 55 313 S -397- -85 Fail: (1) 312 -1.5 -0.6 (2,2:390) 85 4.12 0.00 0.00 UCD010F_G08_BE403803Ta17P025C02P012G071F1_052.ab1 343 439 (14) UCD020R_G08_BE403803Ta17P025C02P012G071R2_052.ab1 335 431 (0) Pass: 3 #reads #contigs (not counting singlets) 2 2 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score 0.0 2 1 -1.5 0 1 Gap # merges # failures size 0 1 0 4 1 0 92 0 1 312 0 1 Offset 0 5 1 3 2 1 Pass 4 Gap Score Merge:(0) 92 0.0 4.3 (2,2:-2) 317 1.46 0.29 0.29 UCD010F_G08_BE403803Ta17P025C02P012G071F1_052.ab1 1 343 (110) C UCD020R_G08_BE403803Ta17P025C02P012G071R2_052.ab1 (36) 395 53 Pass: 4 #reads #contigs (not counting singlets) 4 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score 0.0 1 0 Gap # merges # failures size 92 1 0 Offset 0 2 1 2 Read equivalence class histogram: 4 1 Chimera merges: Contig 1: 960 nodes 268 str. conn. components Path 1 C UCD020R_G08_BE403803Ta17P025C02P012G071R2_052.ab1 431 47 UCD010F_G08_BE403803Ta17P025C02P012G071F1_052.ab1 11 48 C UCD020R_G08_BE403803Ta17P025C02P012G071R2_052.ab1 384 66 UCD010R_G08_BE403803Ta17P025C02P012G071R1_052.ab1 21 67 UCD010F_G08_BE403803Ta17P025C02P012G071F1_052.ab1 30 73 UCD010R_G08_BE403803Ta17P025C02P012G071R1_052.ab1 28 74 UCD010F_G08_BE403803Ta17P025C02P012G071F1_052.ab1 37 75 C UCD020R_G08_BE403803Ta17P025C02P012G071R2_052.ab1 357 86 UCD010F_G08_BE403803Ta17P025C02P012G071F1_052.ab1 49 110 C UCD020R_G08_BE403803Ta17P025C02P012G071R2_052.ab1 322 115 UCD010R_G08_BE403803Ta17P025C02P012G071R1_052.ab1 70 118 UCD010F_G08_BE403803Ta17P025C02P012G071F1_052.ab1 81 119 C UCD020R_G08_BE403803Ta17P025C02P012G071R2_052.ab1 313 123 UCD010R_G08_BE403803Ta17P025C02P012G071R1_052.ab1 78 125 UCD010F_G08_BE403803Ta17P025C02P012G071F1_052.ab1 88 127 C UCD020R_G08_BE403803Ta17P025C02P012G071R2_052.ab1 305 139 UCD010F_G08_BE403803Ta17P025C02P012G071F1_052.ab1 102 143 C UCD020R_G08_BE403803Ta17P025C02P012G071R2_052.ab1 289 146 UCD010F_G08_BE403803Ta17P025C02P012G071F1_052.ab1 109 159 C UCD020R_G08_BE403803Ta17P025C02P012G071R2_052.ab1 273 162 UCD010R_G08_BE403803Ta17P025C02P012G071R1_052.ab1 117 163 UCD010F_G08_BE403803Ta17P025C02P012G071F1_052.ab1 126 179 C UCD020R_G08_BE403803Ta17P025C02P012G071R2_052.ab1 253 186 UCD010F_G08_BE403803Ta17P025C02P012G071F1_052.ab1 149 195 C UCD020R_G08_BE403803Ta17P025C02P012G071R2_052.ab1 237 207 UCD020F_G08_BE403803Ta17P025C02P012G071F2_052.ab1 165 211 UCD010F_G08_BE403803Ta17P025C02P012G071F1_052.ab1 174 215 C UCD020R_G08_BE403803Ta17P025C02P012G071R2_052.ab1 217 222 UCD010F_G08_BE403803Ta17P025C02P012G071F1_052.ab1 185 231 UCD020F_G08_BE403803Ta17P025C02P012G071F2_052.ab1 189 239 UCD010F_G08_BE403803Ta17P025C02P012G071F1_052.ab1 202 246 C UCD020R_G08_BE403803Ta17P025C02P012G071R2_052.ab1 186 263 UCD020F_G08_BE403803Ta17P025C02P012G071F2_052.ab1 221 283 C UCD020R_G08_BE403803Ta17P025C02P012G071R2_052.ab1 149 287 UCD020F_G08_BE403803Ta17P025C02P012G071F2_052.ab1 245 303 C UCD020R_G08_BE403803Ta17P025C02P012G071R2_052.ab1 129 311 UCD020F_G08_BE403803Ta17P025C02P012G071F2_052.ab1 269 315 C UCD020R_G08_BE403803Ta17P025C02P012G071R2_052.ab1 117 331 UCD020F_G08_BE403803Ta17P025C02P012G071F2_052.ab1 289 339 C UCD020R_G08_BE403803Ta17P025C02P012G071R2_052.ab1 93 343 UCD020F_G08_BE403803Ta17P025C02P012G071F2_052.ab1 301 345 C UCD020R_G08_BE403803Ta17P025C02P012G071R2_052.ab1 87 351 UCD020F_G08_BE403803Ta17P025C02P012G071F2_052.ab1 309 360 C UCD020R_G08_BE403803Ta17P025C02P012G071R2_052.ab1 72 363 UCD020F_G08_BE403803Ta17P025C02P012G071F2_052.ab1 321 371 C UCD020R_G08_BE403803Ta17P025C02P012G071R2_052.ab1 61 375 UCD020F_G08_BE403803Ta17P025C02P012G071F2_052.ab1 333 395 C UCD020R_G08_BE403803Ta17P025C02P012G071R2_052.ab1 37 407 UCD020F_G08_BE403803Ta17P025C02P012G071F2_052.ab1 365 Contig length: old 489, new 472 Contig length: old 472, new 472 New start: 0