No. words: 1488; after pruning: 1436


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   37    0.0 7.2 (1,1:378)  338  0.29 0.00 0.00  UCD010F_H08_BE403803Ta18P025C02P012G071F1_050.ab1        1   342 (95)  C UCD020R_H08_BE403803Ta18P025C02P012G071R2_050.ab1   (58)   379    38  
 0  -63  435 431    57     E 375- 431
Fail: (1)   57    0.0 7.1 (2,1:5)  333  0.30 0.00 0.00  UCD010F_H08_BE403803Ta18P025C02P012G071F1_050.ab1        6   342 (95)    UCD020F_H08_BE403803Ta18P025C02P012G071F2_050.ab1        1   337 (99)  
Merge:(0)   57    0.0 6.0 (2,1:5)  369  0.00 0.27 0.00  UCD020R_H08_BE403803Ta18P025C02P012G071R2_050.ab1        1   374 (63)  C UCD020F_H08_BE403803Ta18P025C02P012G071F2_050.ab1   (61)   375     1 *
Merge:(0)    0    0.0 2.9 (3,1:31)  163  2.25 0.00 0.00  UCD010F_H08_BE403803Ta18P025C02P012G071F1_050.ab1       32   209 (228)    UCD010R_H08_BE403803Ta18P025C02P012G071R1_050.ab1        1   178 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        1

Gap   # merges  # failures
 size
 0       1        0
37       1        0
57       1        1

Offset
  0       6 
  1       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  730 nodes

 190 str. conn. components

Path
    1  C UCD020R_H08_BE403803Ta18P025C02P012G071R2_050.ab1   437 
   98    UCD010F_H08_BE403803Ta18P025C02P012G071F1_050.ab1    40 
  102  C UCD020R_H08_BE403803Ta18P025C02P012G071R2_050.ab1   336 
  159    UCD010F_H08_BE403803Ta18P025C02P012G071F1_050.ab1   101 
  163  C UCD020R_H08_BE403803Ta18P025C02P012G071R2_050.ab1   275 
  220    UCD020F_H08_BE403803Ta18P025C02P012G071F2_050.ab1   157 
  224    UCD010F_H08_BE403803Ta18P025C02P012G071F1_050.ab1   166 
  226  C UCD020R_H08_BE403803Ta18P025C02P012G071R2_050.ab1   212 
  236    UCD010F_H08_BE403803Ta18P025C02P012G071F1_050.ab1   178 
  240    UCD020F_H08_BE403803Ta18P025C02P012G071F2_050.ab1   177 
  251    UCD010F_H08_BE403803Ta18P025C02P012G071F1_050.ab1   193 
  259  C UCD020R_H08_BE403803Ta18P025C02P012G071R2_050.ab1   179 
  267    UCD020F_H08_BE403803Ta18P025C02P012G071F2_050.ab1   204 
  275    UCD010F_H08_BE403803Ta18P025C02P012G071F1_050.ab1   217 
  283    UCD020F_H08_BE403803Ta18P025C02P012G071F2_050.ab1   220 
  291    UCD010F_H08_BE403803Ta18P025C02P012G071F1_050.ab1   233 
  295  C UCD020R_H08_BE403803Ta18P025C02P012G071R2_050.ab1   143 
  311    UCD020F_H08_BE403803Ta18P025C02P012G071F2_050.ab1   248 
  331  C UCD020R_H08_BE403803Ta18P025C02P012G071R2_050.ab1   107 
  339    UCD020F_H08_BE403803Ta18P025C02P012G071F2_050.ab1   276 
  359  C UCD020R_H08_BE403803Ta18P025C02P012G071R2_050.ab1    79 
  375    UCD020F_H08_BE403803Ta18P025C02P012G071F2_050.ab1   312 
Contig length: old 499, new 499

Contig length: old 499, new 499
New start: 0