No. words: 1015; after pruning: 989


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.1 (1,1:445)  438  0.00 0.23 0.00  UCD014F_H03_BE403803Ta18P025H01P012G071F1_017.ab1        1   443 (72)  C UCD014R_H03_BE403803Ta18P025H01P012G071R1_017.ab1   (53)   447     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C UCD014R_H03_BE403803Ta18P025H01P012G071R1_017.ab1   500 
  123    UCD014F_H03_BE403803Ta18P025H01P012G071F1_017.ab1    69 
  135  C UCD014R_H03_BE403803Ta18P025H01P012G071R1_017.ab1   366 
  147    UCD014F_H03_BE403803Ta18P025H01P012G071F1_017.ab1    93 
  155  C UCD014R_H03_BE403803Ta18P025H01P012G071R1_017.ab1   346 
  179    UCD014F_H03_BE403803Ta18P025H01P012G071F1_017.ab1   125 
  187  C UCD014R_H03_BE403803Ta18P025H01P012G071R1_017.ab1   314 
  247    UCD014F_H03_BE403803Ta18P025H01P012G071F1_017.ab1   193 
  251  C UCD014R_H03_BE403803Ta18P025H01P012G071R1_017.ab1   250 
  279    UCD014F_H03_BE403803Ta18P025H01P012G071F1_017.ab1   225 
  311  C UCD014R_H03_BE403803Ta18P025H01P012G071R1_017.ab1   190 
  355    UCD014F_H03_BE403803Ta18P025H01P012G071F1_017.ab1   301 
  359  C UCD014R_H03_BE403803Ta18P025H01P012G071R1_017.ab1   142 
  371    UCD014F_H03_BE403803Ta18P025H01P012G071F1_017.ab1   317 
  375  C UCD014R_H03_BE403803Ta18P025H01P012G071R1_017.ab1   126 
  383    UCD014F_H03_BE403803Ta18P025H01P012G071F1_017.ab1   329 
  387  C UCD014R_H03_BE403803Ta18P025H01P012G071R1_017.ab1   114 
  399    UCD014F_H03_BE403803Ta18P025H01P012G071F1_017.ab1   345 
  407  C UCD014R_H03_BE403803Ta18P025H01P012G071R1_017.ab1    94 
  427    UCD014F_H03_BE403803Ta18P025H01P012G071F1_017.ab1   373 
  431  C UCD014R_H03_BE403803Ta18P025H01P012G071R1_017.ab1    70 
  435    UCD014F_H03_BE403803Ta18P025H01P012G071F1_017.ab1   381 
  439  C UCD014R_H03_BE403803Ta18P025H01P012G071R1_017.ab1    62 
  447    UCD014F_H03_BE403803Ta18P025H01P012G071F1_017.ab1   393 
  451  C UCD014R_H03_BE403803Ta18P025H01P012G071R1_017.ab1    50 
  455    UCD014F_H03_BE403803Ta18P025H01P012G071F1_017.ab1   401 
  459  C UCD014R_H03_BE403803Ta18P025H01P012G071R1_017.ab1    42 
  463    UCD014F_H03_BE403803Ta18P025H01P012G071F1_017.ab1   409 
  467  C UCD014R_H03_BE403803Ta18P025H01P012G071R1_017.ab1    34 
  475    UCD014F_H03_BE403803Ta18P025H01P012G071F1_017.ab1   421 
  479  C UCD014R_H03_BE403803Ta18P025H01P012G071R1_017.ab1    22 
  491    UCD014F_H03_BE403803Ta18P025H01P012G071F1_017.ab1   437 
Contig length: old 569, new 569

Contig length: old 569, new 569
New start: 0