No. words: 1721; after pruning: 1669 Histogram of relative pair offsets, for read pairs with multiple alignments: 3 2 Pass 1 Gap Score Pass: 1 #reads #contigs (not counting singlets) 1 4 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score Gap # merges # failures size Offset Pass 3 Gap Score Merge:(0) 0 0.0 7.1 (1,1:387) 378 0.00 0.00 0.51 UCD020F_E09_BE403803Ta23P025C02P012G071F2_071.ab1 1 389 (39) C UCD020R_E09_BE403803Ta23P025C02P012G071R2_071.ab1 (47) 387 1 * Merge:(0) 85 0.0 6.4 (2,1:1) 332 0.88 0.00 0.00 UCD020R_E09_BE403803Ta23P025C02P012G071R2_071.ab1 46 387 (47) C UCD010F_E09_BE403803Ta23P025C02P012G071F1_071.ab1 (92) 342 1 Pass: 3 #reads #contigs (not counting singlets) 1 1 3 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score 0.0 2 0 Gap # merges # failures size 0 1 0 85 1 0 Offset 0 2 1 1 Pass 4 Gap Score -424 -427 0 53 260 E -259- 0 Fail: (1) 260 0.0 1.8 (3,1:381) 156 1.82 0.00 0.00 UCD020R_E09_BE403803Ta23P025C02P012G071R2_071.ab1 267 431 (3) UCD010R_E09_BE403803Ta23P025C02P012G071R1_071.ab1 261 425 (0) 0 -55 424 425 165 I 189- 353 Fail: (1) 165 -1.0 0.7 (3,1:9) 68 1.41 0.00 0.00 UCD010F_E09_BE403803Ta23P025C02P012G071F1_071.ab1 363 433 (1) UCD010R_E09_BE403803Ta23P025C02P012G071R1_071.ab1 355 425 (0) Pass: 4 #reads #contigs (not counting singlets) 1 1 3 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score 0.0 0 1 -1.0 0 1 Gap # merges # failures size 165 0 1 260 0 1 Offset 0 3 1 1 3 2 4 1 Read equivalence class histogram: 1 1 3 1 Chimera merges: Merge:(0) 260 0.0 3.3 (3,1:381) 156 1.82 0.00 0.00 UCD020R_E09_BE403803Ta23P025C02P012G071R2_071.ab1 267 431 (3) UCD010R_E09_BE403803Ta23P025C02P012G071R1_071.ab1 261 425 (0) Contig 1: 692 nodes 140 str. conn. components Path 1 C UCD020R_E09_BE403803Ta23P025C02P012G071R2_071.ab1 434 13 C UCD010R_E09_BE403803Ta23P025C02P012G071R1_071.ab1 416 81 C UCD020R_E09_BE403803Ta23P025C02P012G071R2_071.ab1 354 85 UCD010F_E09_BE403803Ta23P025C02P012G071F1_071.ab1 38 91 UCD020F_E09_BE403803Ta23P025C02P012G071F2_071.ab1 44 93 UCD010F_E09_BE403803Ta23P025C02P012G071F1_071.ab1 46 99 UCD020F_E09_BE403803Ta23P025C02P012G071F2_071.ab1 52 101 UCD010F_E09_BE403803Ta23P025C02P012G071F1_071.ab1 54 131 C UCD020R_E09_BE403803Ta23P025C02P012G071R2_071.ab1 304 139 UCD010F_E09_BE403803Ta23P025C02P012G071F1_071.ab1 92 147 C UCD020R_E09_BE403803Ta23P025C02P012G071R2_071.ab1 288 149 UCD010F_E09_BE403803Ta23P025C02P012G071F1_071.ab1 102 155 UCD020F_E09_BE403803Ta23P025C02P012G071F2_071.ab1 108 159 UCD010F_E09_BE403803Ta23P025C02P012G071F1_071.ab1 112 179 C UCD020R_E09_BE403803Ta23P025C02P012G071R2_071.ab1 256 183 UCD020F_E09_BE403803Ta23P025C02P012G071F2_071.ab1 136 187 UCD010F_E09_BE403803Ta23P025C02P012G071F1_071.ab1 140 207 C UCD020R_E09_BE403803Ta23P025C02P012G071R2_071.ab1 228 211 UCD010F_E09_BE403803Ta23P025C02P012G071F1_071.ab1 164 223 C UCD020R_E09_BE403803Ta23P025C02P012G071R2_071.ab1 212 227 UCD010F_E09_BE403803Ta23P025C02P012G071F1_071.ab1 180 247 UCD020F_E09_BE403803Ta23P025C02P012G071F2_071.ab1 200 267 UCD010F_E09_BE403803Ta23P025C02P012G071F1_071.ab1 220 275 UCD020F_E09_BE403803Ta23P025C02P012G071F2_071.ab1 228 283 C UCD020R_E09_BE403803Ta23P025C02P012G071R2_071.ab1 152 291 UCD020F_E09_BE403803Ta23P025C02P012G071F2_071.ab1 244 347 C UCD020R_E09_BE403803Ta23P025C02P012G071R2_071.ab1 88 351 UCD020F_E09_BE403803Ta23P025C02P012G071F2_071.ab1 304 363 C UCD020R_E09_BE403803Ta23P025C02P012G071R2_071.ab1 72 367 UCD020F_E09_BE403803Ta23P025C02P012G071F2_071.ab1 320 375 C UCD020R_E09_BE403803Ta23P025C02P012G071R2_071.ab1 60 379 UCD020F_E09_BE403803Ta23P025C02P012G071F2_071.ab1 332 403 C UCD020R_E09_BE403803Ta23P025C02P012G071R2_071.ab1 32 407 UCD020F_E09_BE403803Ta23P025C02P012G071F2_071.ab1 360 Contig length: old 481, new 475 Contig length: old 475, new 475 New start: 0