No. words: 1003; after pruning: 977


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:448)  427  0.89 0.22 0.22  UCD014F_G01_BE403803Td01P025H01P012G071F1_003.ab1        1   449 (59)  C UCD014R_G01_BE403803Td01P025H01P012G071R1_003.ab1   (46)   449     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  212 nodes

 108 str. conn. components

Path
    1  C UCD014R_G01_BE403803Td01P025H01P012G071R1_003.ab1   495 
  232    UCD014F_G01_BE403803Td01P025H01P012G071F1_003.ab1   185 
  236  C UCD014R_G01_BE403803Td01P025H01P012G071R1_003.ab1   260 
  300    UCD014F_G01_BE403803Td01P025H01P012G071F1_003.ab1   253 
  304  C UCD014R_G01_BE403803Td01P025H01P012G071R1_003.ab1   192 
  308    UCD014F_G01_BE403803Td01P025H01P012G071F1_003.ab1   261 
  316  C UCD014R_G01_BE403803Td01P025H01P012G071R1_003.ab1   180 
  348    UCD014F_G01_BE403803Td01P025H01P012G071F1_003.ab1   301 
  360  C UCD014R_G01_BE403803Td01P025H01P012G071R1_003.ab1   136 
  368    UCD014F_G01_BE403803Td01P025H01P012G071F1_003.ab1   321 
  384  C UCD014R_G01_BE403803Td01P025H01P012G071R1_003.ab1   112 
  412    UCD014F_G01_BE403803Td01P025H01P012G071F1_003.ab1   365 
  428  C UCD014R_G01_BE403803Td01P025H01P012G071R1_003.ab1    68 
  432    UCD014F_G01_BE403803Td01P025H01P012G071F1_003.ab1   385 
Contig length: old 554, new 555

Contig length: old 555, new 555
New start: 0