No. words: 1005; after pruning: 979


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.7 (1,1:440)  437  0.00 0.23 0.00  UCD014F_H01_BE403803Td02P025H01P012G071F1_001.ab1        1   441 (73)  C UCD014R_H01_BE403803Td02P025H01P012G071R1_001.ab1   (49)   442     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C UCD014R_H01_BE403803Td02P025H01P012G071R1_001.ab1   491 
  207    UCD014F_H01_BE403803Td02P025H01P012G071F1_001.ab1   157 
  211  C UCD014R_H01_BE403803Td02P025H01P012G071R1_001.ab1   281 
  235    UCD014F_H01_BE403803Td02P025H01P012G071F1_001.ab1   185 
  243  C UCD014R_H01_BE403803Td02P025H01P012G071R1_001.ab1   249 
  295    UCD014F_H01_BE403803Td02P025H01P012G071F1_001.ab1   245 
  319  C UCD014R_H01_BE403803Td02P025H01P012G071R1_001.ab1   173 
  327    UCD014F_H01_BE403803Td02P025H01P012G071F1_001.ab1   277 
  343  C UCD014R_H01_BE403803Td02P025H01P012G071R1_001.ab1   149 
  347    UCD014F_H01_BE403803Td02P025H01P012G071F1_001.ab1   297 
  363  C UCD014R_H01_BE403803Td02P025H01P012G071R1_001.ab1   129 
  371    UCD014F_H01_BE403803Td02P025H01P012G071F1_001.ab1   321 
  383  C UCD014R_H01_BE403803Td02P025H01P012G071R1_001.ab1   109 
  399    UCD014F_H01_BE403803Td02P025H01P012G071F1_001.ab1   349 
  407  C UCD014R_H01_BE403803Td02P025H01P012G071R1_001.ab1    85 
  415    UCD014F_H01_BE403803Td02P025H01P012G071F1_001.ab1   365 
  439  C UCD014R_H01_BE403803Td02P025H01P012G071R1_001.ab1    53 
  451    UCD014F_H01_BE403803Td02P025H01P012G071F1_001.ab1   401 
Contig length: old 564, new 564

Contig length: old 564, new 564
New start: 0