No. words: 1010; after pruning: 984


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.4 (1,1:449)  438  0.22 0.22 0.22  UCD014F_A03_BE403803Td05P025H01P012G071F1_031.ab1        1   450 (62)  C UCD014R_A03_BE403803Td05P025H01P012G071R1_031.ab1   (48)   450     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C UCD014R_A03_BE403803Td05P025H01P012G071R1_031.ab1   498 
  122    UCD014F_A03_BE403803Td05P025H01P012G071F1_031.ab1    73 
  134  C UCD014R_A03_BE403803Td05P025H01P012G071R1_031.ab1   365 
  206    UCD014F_A03_BE403803Td05P025H01P012G071F1_031.ab1   157 
  210  C UCD014R_A03_BE403803Td05P025H01P012G071R1_031.ab1   289 
  278    UCD014F_A03_BE403803Td05P025H01P012G071F1_031.ab1   229 
  282  C UCD014R_A03_BE403803Td05P025H01P012G071R1_031.ab1   217 
  302    UCD014F_A03_BE403803Td05P025H01P012G071F1_031.ab1   253 
  306  C UCD014R_A03_BE403803Td05P025H01P012G071R1_031.ab1   193 
  326    UCD014F_A03_BE403803Td05P025H01P012G071F1_031.ab1   277 
  334  C UCD014R_A03_BE403803Td05P025H01P012G071R1_031.ab1   165 
  350    UCD014F_A03_BE403803Td05P025H01P012G071F1_031.ab1   301 
  362  C UCD014R_A03_BE403803Td05P025H01P012G071R1_031.ab1   137 
  370    UCD014F_A03_BE403803Td05P025H01P012G071F1_031.ab1   321 
  386  C UCD014R_A03_BE403803Td05P025H01P012G071R1_031.ab1   113 
  398    UCD014F_A03_BE403803Td05P025H01P012G071F1_031.ab1   349 
  410  C UCD014R_A03_BE403803Td05P025H01P012G071R1_031.ab1    89 
  414    UCD014F_A03_BE403803Td05P025H01P012G071F1_031.ab1   365 
  430  C UCD014R_A03_BE403803Td05P025H01P012G071R1_031.ab1    69 
  442    UCD014F_A03_BE403803Td05P025H01P012G071F1_031.ab1   393 
  446  C UCD014R_A03_BE403803Td05P025H01P012G071R1_031.ab1    53 
  458    UCD014F_A03_BE403803Td05P025H01P012G071F1_031.ab1   409 
Contig length: old 560, new 561

Contig length: old 561, new 561
New start: 0