No. words: 916; after pruning: 890


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 6.1 (1,1:303)  283  0.00 0.33 0.33  UCD018F_B03_BE404332LD02P028A03A091F1_029.ab1        2   304 (163)  C UCD018R_B03_BE404332LD02P028A03A091R1_029.ab1   (146)   303     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  146 nodes

 75 str. conn. components

Path
    1  C UCD018R_B03_BE404332LD02P028A03A091R1_029.ab1   449 
  307    UCD018F_B03_BE404332LD02P028A03A091F1_029.ab1   161 
Contig length: old 612, new 613

Contig length: old 613, new 613
New start: 0