No. words: 951; after pruning: 925


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.7 (1,1:413)  310  3.34 0.28 0.00  UCD018F_C03_BE404332LD03P028A03A091F1_027.ab1        2   360 (0)  C UCD018R_C03_BE404332LD03P028A03A091R1_027.ab1   (177)   414    55 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  148 nodes

 76 str. conn. components

Path
    1  C UCD018R_C03_BE404332LD03P028A03A091R1_027.ab1   591 
  330    UCD018F_C03_BE404332LD03P028A03A091F1_027.ab1   153 
  338  C UCD018R_C03_BE404332LD03P028A03A091R1_027.ab1   254 
  410    UCD018F_C03_BE404332LD03P028A03A091F1_027.ab1   233 
  414  C UCD018R_C03_BE404332LD03P028A03A091R1_027.ab1   178 
  422    UCD018F_C03_BE404332LD03P028A03A091F1_027.ab1   245 
  478  C UCD018R_C03_BE404332LD03P028A03A091R1_027.ab1   114 
  500    UCD018F_C03_BE404332LD03P028A03A091F1_027.ab1   323 
  515  C UCD018R_C03_BE404332LD03P028A03A091R1_027.ab1    77 
  525    UCD018F_C03_BE404332LD03P028A03A091F1_027.ab1   348 
  529  C UCD018R_C03_BE404332LD03P028A03A091R1_027.ab1    63 
Contig length: old 591, new 591

Contig length: old 591, new 591
New start: 0 
S Change at: 427; seg lengths: entry 3, contig 3
S Change at: 511; seg lengths: entry 1, contig 1