No. words: 917; after pruning: 891


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 3.5 (1,1:302)  279  0.00 0.00 0.99  UCD018F_F03_BE404332LD06P028A03A091F1_021.ab1        2   305 (166)  C UCD018R_F03_BE404332LD06P028A03A091R1_021.ab1   (145)   301     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  142 nodes

 73 str. conn. components

Path
    1  C UCD018R_F03_BE404332LD06P028A03A091R1_021.ab1   446 
  309    UCD018F_F03_BE404332LD06P028A03A091F1_021.ab1   165 
  321  C UCD018R_F03_BE404332LD06P028A03A091R1_021.ab1   126 
  389    UCD018F_F03_BE404332LD06P028A03A091F1_021.ab1   245 
Contig length: old 614, new 615

Contig length: old 615, new 615
New start: 0