No. words: 923; after pruning: 897


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 5.6 (1,1:299)  287  0.00 0.00 0.00  UCD018F_D04_BE404332LD12P028A03A091F1_026.ab1        2   299 (180)  C UCD018R_D04_BE404332LD12P028A03A091R1_026.ab1   (145)   299     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  150 nodes

 77 str. conn. components

Path
    1  C UCD018R_D04_BE404332LD12P028A03A091R1_026.ab1   444 
  269    UCD018F_D04_BE404332LD12P028A03A091F1_026.ab1   125 
  289  C UCD018R_D04_BE404332LD12P028A03A091R1_026.ab1   156 
  325    UCD018F_D04_BE404332LD12P028A03A091F1_026.ab1   181 
Contig length: old 623, new 623

Contig length: old 623, new 623
New start: 0