No. words: 1939; after pruning: 1900


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.9 (1,1:1156)  434  0.00 0.00 0.00  UCD020F_B04_BE405604Sn30P001C05P001C111F2_030.ab1      372   819 (0)  C UCD020R_B04_BE405604Sn30P001C05P001C111R2_030.ab1   (0)   786   339 *

Pass: 3
#reads  #contigs (not counting singlets)
    1      1
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    
Merge:(0)    0    0.0 4.5 (2,1:1181)  284  0.33 0.98 0.00  UCD020R_B04_BE405604Sn30P001C05P001C111R2_030.ab1        1   306 (480)    UCD010R_B04_BE405604Sn30P001C05P001C111R1_030.ab1       26   334 (0) *

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  368 nodes

 187 str. conn. components

Path
    1    UCD010R_B04_BE405604Sn30P001C05P001C111R1_030.ab1     1 
   52    UCD020R_B04_BE405604Sn30P001C05P001C111R2_030.ab1    27 
   56    UCD010R_B04_BE405604Sn30P001C05P001C111R1_030.ab1    56 
   80    UCD020R_B04_BE405604Sn30P001C05P001C111R2_030.ab1    55 
   84    UCD010R_B04_BE405604Sn30P001C05P001C111R1_030.ab1    84 
  100    UCD020R_B04_BE405604Sn30P001C05P001C111R2_030.ab1    75 
  112    UCD010R_B04_BE405604Sn30P001C05P001C111R1_030.ab1   112 
  132    UCD020R_B04_BE405604Sn30P001C05P001C111R2_030.ab1   107 
  136    UCD010R_B04_BE405604Sn30P001C05P001C111R1_030.ab1   136 
  216    UCD020R_B04_BE405604Sn30P001C05P001C111R2_030.ab1   191 
  496  C UCD020F_B04_BE405604Sn30P001C05P001C111F2_030.ab1   687 
  500    UCD020R_B04_BE405604Sn30P001C05P001C111R2_030.ab1   475 
  568  C UCD020F_B04_BE405604Sn30P001C05P001C111F2_030.ab1   615 
  580    UCD020R_B04_BE405604Sn30P001C05P001C111R2_030.ab1   555 
  584  C UCD020F_B04_BE405604Sn30P001C05P001C111F2_030.ab1   599 
  600    UCD020R_B04_BE405604Sn30P001C05P001C111R2_030.ab1   575 
  604  C UCD020F_B04_BE405604Sn30P001C05P001C111F2_030.ab1   579 
Contig length: old 1182, new 1182

Contig length: old 1182, new 1182
New start: 0