No. words: 2097; after pruning: 2058


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.3 (1,1:1176)  454  0.00 0.00 0.00  UCD020F_D04_BE405604Sn32P001C05P001C111F2_026.ab1      359   824 (0)  C UCD020R_D04_BE405604Sn32P001C05P001C111R2_026.ab1   (0)   819   354 *
Merge:(0)    0   -0.1 4.2 (2,1:1187)  375  2.95 0.91 0.00  UCD020R_D04_BE405604Sn32P001C05P001C111R2_026.ab1        1   441 (378)    UCD010R_D04_BE405604Sn32P001C05P001C111R1_026.ab1       10   454 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0
-0.1       1        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       2 
  2       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  438 nodes

 209 str. conn. components

Path
    1    UCD010R_D04_BE405604Sn32P001C05P001C111R1_026.ab1     1 
   73    UCD020R_D04_BE405604Sn32P001C05P001C111R2_026.ab1    63 
   77    UCD010R_D04_BE405604Sn32P001C05P001C111R1_026.ab1    77 
   93    UCD020R_D04_BE405604Sn32P001C05P001C111R2_026.ab1    83 
   97    UCD010R_D04_BE405604Sn32P001C05P001C111R1_026.ab1    97 
  113    UCD020R_D04_BE405604Sn32P001C05P001C111R2_026.ab1   103 
  121    UCD010R_D04_BE405604Sn32P001C05P001C111R1_026.ab1   121 
  201    UCD020R_D04_BE405604Sn32P001C05P001C111R2_026.ab1   191 
  225    UCD010R_D04_BE405604Sn32P001C05P001C111R1_026.ab1   225 
  229    UCD020R_D04_BE405604Sn32P001C05P001C111R2_026.ab1   219 
  493  C UCD020F_D04_BE405604Sn32P001C05P001C111F2_026.ab1   695 
  497    UCD020R_D04_BE405604Sn32P001C05P001C111R2_026.ab1   487 
  509  C UCD020F_D04_BE405604Sn32P001C05P001C111F2_026.ab1   679 
  521    UCD020R_D04_BE405604Sn32P001C05P001C111R2_026.ab1   511 
  541  C UCD020F_D04_BE405604Sn32P001C05P001C111F2_026.ab1   647 
  545    UCD020R_D04_BE405604Sn32P001C05P001C111R2_026.ab1   535 
  569  C UCD020F_D04_BE405604Sn32P001C05P001C111F2_026.ab1   619 
Contig length: old 1188, new 1187

Contig length: old 1187, new 1187
New start: 0