No. words: 2343; after pruning: 2304


Histogram of relative pair offsets, for read pairs with multiple alignments:
 4     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.7 (1,1:1221)  557  0.00 0.00 0.00  UCD020F_E02_BE405604Ta13P001C05P001C111F2_008.ab1      344   917 (0)  C UCD020R_E02_BE405604Ta13P001C05P001C111R2_008.ab1   (0)   879   306 *
Merge:(0)   17    0.0 3.6 (2,1:1229)  433  2.33 1.17 0.19  UCD020R_E02_BE405604Ta13P001C05P001C111R2_008.ab1        6   519 (360)    UCD010R_E02_BE405604Ta13P001C05P001C111R1_008.ab1       12   530 (17) *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
17       1        0

Offset
  0       2 
  2       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  594 nodes

 272 str. conn. components

Path
    1    UCD010R_E02_BE405604Ta13P001C05P001C111R1_008.ab1     1 
   64    UCD020R_E02_BE405604Ta13P001C05P001C111R2_008.ab1    57 
   68    UCD010R_E02_BE405604Ta13P001C05P001C111R1_008.ab1    68 
   72    UCD020R_E02_BE405604Ta13P001C05P001C111R2_008.ab1    65 
   76    UCD010R_E02_BE405604Ta13P001C05P001C111R1_008.ab1    76 
   80    UCD020R_E02_BE405604Ta13P001C05P001C111R2_008.ab1    73 
  112    UCD010R_E02_BE405604Ta13P001C05P001C111R1_008.ab1   112 
  124    UCD020R_E02_BE405604Ta13P001C05P001C111R2_008.ab1   117 
  136    UCD010R_E02_BE405604Ta13P001C05P001C111R1_008.ab1   136 
  144    UCD020R_E02_BE405604Ta13P001C05P001C111R2_008.ab1   137 
  156    UCD010R_E02_BE405604Ta13P001C05P001C111R1_008.ab1   156 
  164    UCD020R_E02_BE405604Ta13P001C05P001C111R2_008.ab1   157 
  172    UCD010R_E02_BE405604Ta13P001C05P001C111R1_008.ab1   172 
  180    UCD020R_E02_BE405604Ta13P001C05P001C111R2_008.ab1   173 
  599  C UCD020F_E02_BE405604Ta13P001C05P001C111F2_008.ab1   631 
  603    UCD020R_E02_BE405604Ta13P001C05P001C111R2_008.ab1   596 
  619  C UCD020F_E02_BE405604Ta13P001C05P001C111F2_008.ab1   611 
  627    UCD020R_E02_BE405604Ta13P001C05P001C111R2_008.ab1   620 
  631  C UCD020F_E02_BE405604Ta13P001C05P001C111F2_008.ab1   599 
Contig length: old 1230, new 1229

Contig length: old 1229, new 1229
New start: 0