No. words: 2244; after pruning: 2205


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.7 (1,1:1206)  514  0.00 0.19 0.19  UCD020F_F02_BE405604Ta14P001C05P001C111F2_006.ab1      339   877 (0)  C UCD020R_F02_BE405604Ta14P001C05P001C111R2_006.ab1   (0)   869   331 *
Merge:(0)    0    0.0 8.7 (2,1:1212)  444  1.63 0.41 0.00  UCD020R_F02_BE405604Ta14P001C05P001C111R2_006.ab1        1   491 (378)    UCD010R_F02_BE405604Ta14P001C05P001C111R1_006.ab1        6   498 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       2 
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  562 nodes

 284 str. conn. components

Path
    1    UCD010R_F02_BE405604Ta14P001C05P001C111R1_006.ab1     1 
   65    UCD020R_F02_BE405604Ta14P001C05P001C111R2_006.ab1    60 
   69    UCD010R_F02_BE405604Ta14P001C05P001C111R1_006.ab1    69 
  105    UCD020R_F02_BE405604Ta14P001C05P001C111R2_006.ab1   100 
  113    UCD010R_F02_BE405604Ta14P001C05P001C111R1_006.ab1   113 
  121    UCD020R_F02_BE405604Ta14P001C05P001C111R2_006.ab1   116 
  129    UCD010R_F02_BE405604Ta14P001C05P001C111R1_006.ab1   129 
  133    UCD020R_F02_BE405604Ta14P001C05P001C111R2_006.ab1   128 
  161    UCD010R_F02_BE405604Ta14P001C05P001C111R1_006.ab1   161 
  165    UCD020R_F02_BE405604Ta14P001C05P001C111R2_006.ab1   160 
  578  C UCD020F_F02_BE405604Ta14P001C05P001C111F2_006.ab1   635 
Contig length: old 1213, new 1212

Contig length: old 1212, new 1212
New start: 0