No. words: 2087; after pruning: 2048


Histogram of relative pair offsets, for read pairs with multiple alignments:
 4     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.4 (1,1:1167)  553  0.68 0.17 0.00  UCD020F_G02_BE405604Ta15P001C05P001C111F2_004.ab1      307   892 (0)  C UCD020R_G02_BE405604Ta15P001C05P001C111R2_004.ab1   (0)   863   277 *

Pass: 3
#reads  #contigs (not counting singlets)
    1      1
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    
 -331  -1136  0 31    140     I -248- -109
Fail: (1)  136   -3.1 -1.3 (2,1:1136)   95  3.67 0.00 0.00  UCD020R_G02_BE405604Ta15P001C05P001C111R2_004.ab1       32   140 (723)    UCD010R_G02_BE405604Ta15P001C05P001C111R1_004.ab1        1   109 (223)  
  Worst pair: offset 4 
LLR breakdown: discreps: -2.2 (<20 part: -2.2 (#=5), >20:0.0 (#=0); in HQ: -2.2, out HQ 0.0), match: 1.7  lead: -2.7  total: -3.2   64  6.02 0.00 0.00  UCD020R_G02_BE405604Ta15P001C05P001C111R2_004.ab1      277   359 (504)    UCD010R_G02_BE405604Ta15P001C05P001C111R1_004.ab1      250   332 (0)  

Pass: 4
#reads  #contigs (not counting singlets)
    1      1
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.1       0        1

Gap   # merges  # failures
 size
136       0        1

Offset
  0       1 
  4       2 

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 2:  284 nodes

 144 str. conn. components

Path
    1    UCD020F_G02_BE405604Ta15P001C05P001C111F2_004.ab1     1 
  582  C UCD020R_G02_BE405604Ta15P001C05P001C111R2_004.ab1   588 
  586    UCD020F_G02_BE405604Ta15P001C05P001C111F2_004.ab1   586 
  614  C UCD020R_G02_BE405604Ta15P001C05P001C111R2_004.ab1   556 
  618    UCD020F_G02_BE405604Ta15P001C05P001C111F2_004.ab1   618 
  630  C UCD020R_G02_BE405604Ta15P001C05P001C111R2_004.ab1   540 
  642    UCD020F_G02_BE405604Ta15P001C05P001C111F2_004.ab1   642 
  650  C UCD020R_G02_BE405604Ta15P001C05P001C111R2_004.ab1   520 
  658    UCD020F_G02_BE405604Ta15P001C05P001C111F2_004.ab1   658 
  670  C UCD020R_G02_BE405604Ta15P001C05P001C111R2_004.ab1   500 
Contig length: old 1168, new 1169

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    UCD010R_G02_BE405604Ta15P001C05P001C111R1_004.ab1     1 
Contig length: old 332, new 332

Contig length: old 1169, new 1169
New start: 0