No. words: 2904; after pruning: 2852


Histogram of relative pair offsets, for read pairs with multiple alignments:
 0     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.9 (1,1:-6)  645  0.15 0.00 0.30  UCD010F_H02_BE405604Ta16P001C05P001C111F1_002.ab1        1   672 (0)    UCD020F_H02_BE405604Ta16P001C05P001C111F2_002.ab1        9   678 (246) *
Merge:(0)    0    0.0 12.7 (2,1:1208)  553  0.00 0.00 0.00  UCD020F_H02_BE405604Ta16P001C05P001C111F2_002.ab1      352   924 (0)  C UCD020R_H02_BE405604Ta16P001C05P001C111R2_002.ab1   (0)   864   292 *
Merge:(0)    0    0.0 3.5 (3,1:1216)  355  3.23 0.92 0.46  UCD020R_H02_BE405604Ta16P001C05P001C111R2_002.ab1        1   434 (430)    UCD010R_H02_BE405604Ta16P001C05P001C111R1_002.ab1        9   444 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       3        0

Offset
  0       3 
  1       1 
  2       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  1004 nodes

 412 str. conn. components

Path
    1    UCD020F_H02_BE405604Ta16P001C05P001C111F2_002.ab1     1 
   16    UCD010F_H02_BE405604Ta16P001C05P001C111F1_002.ab1     8 
   28    UCD020F_H02_BE405604Ta16P001C05P001C111F2_002.ab1    27 
   72    UCD010F_H02_BE405604Ta16P001C05P001C111F1_002.ab1    64 
   76    UCD020F_H02_BE405604Ta16P001C05P001C111F2_002.ab1    75 
  200    UCD010F_H02_BE405604Ta16P001C05P001C111F1_002.ab1   192 
  208    UCD020F_H02_BE405604Ta16P001C05P001C111F2_002.ab1   207 
  315    UCD010F_H02_BE405604Ta16P001C05P001C111F1_002.ab1   307 
  323    UCD020F_H02_BE405604Ta16P001C05P001C111F2_002.ab1   322 
  372    UCD010F_H02_BE405604Ta16P001C05P001C111F1_002.ab1   364 
  375    UCD020F_H02_BE405604Ta16P001C05P001C111F2_002.ab1   374 
  592  C UCD020R_H02_BE405604Ta16P001C05P001C111R2_002.ab1   625 
  600    UCD020F_H02_BE405604Ta16P001C05P001C111F2_002.ab1   599 
  632  C UCD020R_H02_BE405604Ta16P001C05P001C111R2_002.ab1   585 
  636    UCD020F_H02_BE405604Ta16P001C05P001C111F2_002.ab1   635 
  640  C UCD020R_H02_BE405604Ta16P001C05P001C111R2_002.ab1   577 
 1110  C UCD010R_H02_BE405604Ta16P001C05P001C111R1_002.ab1   115 
 1118  C UCD020R_H02_BE405604Ta16P001C05P001C111R2_002.ab1    99 
 1202  C UCD010R_H02_BE405604Ta16P001C05P001C111R1_002.ab1    23 
Contig length: old 1223, new 1224

Contig length: old 1224, new 1224
New start: 0