No. words: 2204; after pruning: 2165


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:1197)  477  0.00 0.00 0.00  UCD020F_B03_BE405604Ta18P001C05P001C111F2_029.ab1      350   840 (0)  C UCD020R_B03_BE405604Ta18P001C05P001C111R2_029.ab1   (0)   849   359 *
Merge:(0)    0   -0.3 3.3 (2,1:1212)  404  4.42 0.60 0.20  UCD020R_B03_BE405604Ta18P001C05P001C111R2_029.ab1        1   498 (351)    UCD010R_B03_BE405604Ta18P001C05P001C111R1_029.ab1       16   515 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0
-0.3       1        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       2 
  2       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  476 nodes

 209 str. conn. components

Path
    1    UCD010R_B03_BE405604Ta18P001C05P001C111R1_029.ab1     1 
   23    UCD020R_B03_BE405604Ta18P001C05P001C111R2_029.ab1     8 
   70    UCD010R_B03_BE405604Ta18P001C05P001C111R1_029.ab1    69 
   78    UCD020R_B03_BE405604Ta18P001C05P001C111R2_029.ab1    63 
   86    UCD010R_B03_BE405604Ta18P001C05P001C111R1_029.ab1    85 
  102    UCD020R_B03_BE405604Ta18P001C05P001C111R2_029.ab1    87 
  110    UCD010R_B03_BE405604Ta18P001C05P001C111R1_029.ab1   109 
  122    UCD020R_B03_BE405604Ta18P001C05P001C111R2_029.ab1   107 
  130    UCD010R_B03_BE405604Ta18P001C05P001C111R1_029.ab1   129 
  134    UCD020R_B03_BE405604Ta18P001C05P001C111R2_029.ab1   119 
  138    UCD010R_B03_BE405604Ta18P001C05P001C111R1_029.ab1   137 
  194    UCD020R_B03_BE405604Ta18P001C05P001C111R2_029.ab1   179 
  198    UCD010R_B03_BE405604Ta18P001C05P001C111R1_029.ab1   197 
  266    UCD020R_B03_BE405604Ta18P001C05P001C111R2_029.ab1   251 
  509  C UCD020F_B03_BE405604Ta18P001C05P001C111F2_029.ab1   705 
  513    UCD020R_B03_BE405604Ta18P001C05P001C111R2_029.ab1   498 
  577  C UCD020F_B03_BE405604Ta18P001C05P001C111F2_029.ab1   637 
  581    UCD020R_B03_BE405604Ta18P001C05P001C111R2_029.ab1   566 
  585  C UCD020F_B03_BE405604Ta18P001C05P001C111F2_029.ab1   629 
  617    UCD020R_B03_BE405604Ta18P001C05P001C111R2_029.ab1   602 
  621  C UCD020F_B03_BE405604Ta18P001C05P001C111F2_029.ab1   593 
Contig length: old 1213, new 1213

Contig length: old 1213, new 1213
New start: 0