No. words: 2383; after pruning: 2344


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.7 (1,1:1201)  558  0.49 0.49 0.33  UCD020F_C03_BE405604Ta19P001C05P001C111F2_027.ab1      305   912 (0)  C UCD020R_C03_BE405604Ta19P001C05P001C111R2_027.ab1   (0)   898   290 *
Merge:(0)    0    0.0 8.5 (2,1:1200)  527  0.53 0.70 0.00  UCD020R_C03_BE405604Ta19P001C05P001C111R2_027.ab1        5   573 (325)    UCD010R_C03_BE405604Ta19P001C05P001C111R1_027.ab1        1   573 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       2 
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  674 nodes

 277 str. conn. components

Path
    1    UCD020R_C03_BE405604Ta19P001C05P001C111R2_027.ab1     1 
    8    UCD010R_C03_BE405604Ta19P001C05P001C111R1_027.ab1     4 
   23    UCD020R_C03_BE405604Ta19P001C05P001C111R2_027.ab1    22 
   35    UCD010R_C03_BE405604Ta19P001C05P001C111R1_027.ab1    31 
   55    UCD020R_C03_BE405604Ta19P001C05P001C111R2_027.ab1    54 
   59    UCD010R_C03_BE405604Ta19P001C05P001C111R1_027.ab1    55 
   63    UCD020R_C03_BE405604Ta19P001C05P001C111R2_027.ab1    62 
   67    UCD010R_C03_BE405604Ta19P001C05P001C111R1_027.ab1    63 
   87    UCD020R_C03_BE405604Ta19P001C05P001C111R2_027.ab1    86 
  107    UCD010R_C03_BE405604Ta19P001C05P001C111R1_027.ab1   103 
  223    UCD020R_C03_BE405604Ta19P001C05P001C111R2_027.ab1   222 
  583  C UCD020F_C03_BE405604Ta19P001C05P001C111F2_027.ab1   621 
  587    UCD020R_C03_BE405604Ta19P001C05P001C111R2_027.ab1   586 
  595  C UCD020F_C03_BE405604Ta19P001C05P001C111F2_027.ab1   609 
Contig length: old 1202, new 1203

Contig length: old 1203, new 1203
New start: 0