No. words: 1939; after pruning: 1900


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.2 (1,1:1205)  535  0.00 0.00 0.00  UCD020F_G03_BE405604Ta23P001C05P001C111F2_019.ab1      337   886 (0)  C UCD020R_G03_BE405604Ta23P001C05P001C111R2_019.ab1   (0)   870   321 *

Pass: 3
#reads  #contigs (not counting singlets)
    1      1
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    
Merge:(0)    1    0.0 2.9 (2,1:1198)  169  1.10 0.00 0.00  UCD020R_G03_BE405604Ta23P001C05P001C111R2_019.ab1        8   189 (681)    UCD010R_G03_BE405604Ta23P001C05P001C111R1_019.ab1        1   182 (1) *

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  362 nodes

 184 str. conn. components

Path
    1    UCD020R_G03_BE405604Ta23P001C05P001C111R2_019.ab1     1 
  499  C UCD020F_G03_BE405604Ta23P001C05P001C111F2_019.ab1   708 
  503    UCD020R_G03_BE405604Ta23P001C05P001C111R2_019.ab1   503 
  547  C UCD020F_G03_BE405604Ta23P001C05P001C111F2_019.ab1   660 
  555    UCD020R_G03_BE405604Ta23P001C05P001C111R2_019.ab1   555 
  567  C UCD020F_G03_BE405604Ta23P001C05P001C111F2_019.ab1   640 
  579    UCD020R_G03_BE405604Ta23P001C05P001C111R2_019.ab1   579 
  583  C UCD020F_G03_BE405604Ta23P001C05P001C111F2_019.ab1   624 
Contig length: old 1206, new 1206

Contig length: old 1206, new 1206
New start: 0