No. words: 2477; after pruning: 2438


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.2 (1,1:1197)  576  0.00 0.00 0.00  UCD020F_B01_BE405604Td02P001C05P001C111F2_013.ab1      308   901 (0)  C UCD020R_B01_BE405604Td02P001C05P001C111R2_013.ab1   (0)   891   298 *
Merge:(0)    0    0.0 9.3 (2,1:1203)  553  3.99 0.89 0.00  UCD020R_B01_BE405604Td02P001C05P001C111R2_013.ab1        1   676 (215)    UCD010R_B01_BE405604Td02P001C05P001C111R1_013.ab1        4   685 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       2 
  2       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  718 nodes

 288 str. conn. components

Path
    1    UCD010R_B01_BE405604Td02P001C05P001C111R1_013.ab1     1 
   22    UCD020R_B01_BE405604Td02P001C05P001C111R2_013.ab1    17 
   26    UCD010R_B01_BE405604Td02P001C05P001C111R1_013.ab1    26 
   34    UCD020R_B01_BE405604Td02P001C05P001C111R2_013.ab1    29 
   42    UCD010R_B01_BE405604Td02P001C05P001C111R1_013.ab1    42 
   62    UCD020R_B01_BE405604Td02P001C05P001C111R2_013.ab1    57 
   66    UCD010R_B01_BE405604Td02P001C05P001C111R1_013.ab1    66 
   90    UCD020R_B01_BE405604Td02P001C05P001C111R2_013.ab1    85 
   94    UCD010R_B01_BE405604Td02P001C05P001C111R1_013.ab1    94 
  130    UCD020R_B01_BE405604Td02P001C05P001C111R2_013.ab1   125 
  134    UCD010R_B01_BE405604Td02P001C05P001C111R1_013.ab1   134 
  190    UCD020R_B01_BE405604Td02P001C05P001C111R2_013.ab1   185 
  198    UCD010R_B01_BE405604Td02P001C05P001C111R1_013.ab1   198 
  246    UCD020R_B01_BE405604Td02P001C05P001C111R2_013.ab1   241 
  250    UCD010R_B01_BE405604Td02P001C05P001C111R1_013.ab1   250 
  278    UCD020R_B01_BE405604Td02P001C05P001C111R2_013.ab1   273 
  465  C UCD020F_B01_BE405604Td02P001C05P001C111F2_013.ab1   739 
  467    UCD020R_B01_BE405604Td02P001C05P001C111R2_013.ab1   462 
  569  C UCD020F_B01_BE405604Td02P001C05P001C111F2_013.ab1   635 
  573    UCD020R_B01_BE405604Td02P001C05P001C111R2_013.ab1   568 
  583  C UCD020F_B01_BE405604Td02P001C05P001C111F2_013.ab1   621 
  591    UCD020R_B01_BE405604Td02P001C05P001C111R2_013.ab1   586 
  593  C UCD020F_B01_BE405604Td02P001C05P001C111F2_013.ab1   611 
  597    UCD020R_B01_BE405604Td02P001C05P001C111R2_013.ab1   592 
  605  C UCD020F_B01_BE405604Td02P001C05P001C111F2_013.ab1   599 
  611    UCD020R_B01_BE405604Td02P001C05P001C111R2_013.ab1   606 
  613  C UCD020F_B01_BE405604Td02P001C05P001C111F2_013.ab1   591 
  617    UCD020R_B01_BE405604Td02P001C05P001C111R2_013.ab1   612 
  629  C UCD020F_B01_BE405604Td02P001C05P001C111F2_013.ab1   575 
  655    UCD020R_B01_BE405604Td02P001C05P001C111R2_013.ab1   650 
  659  C UCD020F_B01_BE405604Td02P001C05P001C111F2_013.ab1   545 
  685    UCD020R_B01_BE405604Td02P001C05P001C111R2_013.ab1   680 
  689  C UCD020F_B01_BE405604Td02P001C05P001C111F2_013.ab1   515 
Contig length: old 1204, new 1203

Contig length: old 1203, new 1203
New start: 0