No. words: 1545; after pruning: 1506


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 2.9 (1,1:1105)  247  2.82 0.35 0.00  UCD020F_D01_BE405604Td04P001C05P001C111F2_009.ab1      409   692 (2)  C UCD020R_D01_BE405604Td04P001C05P001C111R2_009.ab1   (0)   699   415 *

Pass: 3
#reads  #contigs (not counting singlets)
    1      1
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    
Merge:(0)    0   -1.7 -1.7 (2,1:1115)  115  4.93 0.00 0.00  UCD020R_D01_BE405604Td04P001C05P001C111R2_009.ab1        1   142 (557)    UCD010R_D01_BE405604Td04P001C05P001C111R1_009.ab1       11   152 (0) *

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.7       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  174 nodes

 90 str. conn. components

Path
    1    UCD010R_D01_BE405604Td04P001C05P001C111R1_009.ab1     1 
  147    UCD020R_D01_BE405604Td04P001C05P001C111R2_009.ab1   137 
  443  C UCD020F_D01_BE405604Td04P001C05P001C111F2_009.ab1   674 
  452    UCD020R_D01_BE405604Td04P001C05P001C111R2_009.ab1   442 
  460  C UCD020F_D01_BE405604Td04P001C05P001C111F2_009.ab1   657 
  464    UCD020R_D01_BE405604Td04P001C05P001C111R2_009.ab1   454 
  468  C UCD020F_D01_BE405604Td04P001C05P001C111F2_009.ab1   649 
  489    UCD020R_D01_BE405604Td04P001C05P001C111R2_009.ab1   480 
  497  C UCD020F_D01_BE405604Td04P001C05P001C111F2_009.ab1   620 
Contig length: old 1116, new 1116

Contig length: old 1116, new 1117
New start: 0 
I Change at: 472; seg lengths: entry 1, contig 0