No. words: 2299; after pruning: 2246


Histogram of relative pair offsets, for read pairs with multiple alignments:
 4     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.5 (1,1:1211)  546  0.35 0.00 0.00  UCD020F_E01_BE405604Td05P001C05P001C111F2_007.ab1      374   942 (0)  C UCD020R_E01_BE405604Td05P001C05P001C111R2_007.ab1   (0)   839   271 *
Merge:(0)    0    0.0 4.1 (2,1:1229)  207  2.17 0.00 0.00  UCD020F_E01_BE405604Td05P001C05P001C111F2_007.ab1      713   942 (0)  C UCD010R_E01_BE405604Td05P001C05P001C111R1_007.ab1   (0)   518   289 *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       2 
  2       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  588 nodes

 278 str. conn. components

Path
    1    UCD010R_E01_BE405604Td05P001C05P001C111R1_007.ab1     1 
   28    UCD020R_E01_BE405604Td05P001C05P001C111R2_007.ab1    14 
   36    UCD010R_E01_BE405604Td05P001C05P001C111R1_007.ab1    36 
   59    UCD020R_E01_BE405604Td05P001C05P001C111R2_007.ab1    44 
   63    UCD010R_E01_BE405604Td05P001C05P001C111R1_007.ab1    63 
  127    UCD020R_E01_BE405604Td05P001C05P001C111R2_007.ab1   112 
  131    UCD010R_E01_BE405604Td05P001C05P001C111R1_007.ab1   131 
  147    UCD020R_E01_BE405604Td05P001C05P001C111R2_007.ab1   132 
  151    UCD010R_E01_BE405604Td05P001C05P001C111R1_007.ab1   151 
  155    UCD020R_E01_BE405604Td05P001C05P001C111R2_007.ab1   140 
  179    UCD010R_E01_BE405604Td05P001C05P001C111R1_007.ab1   179 
  187    UCD020R_E01_BE405604Td05P001C05P001C111R2_007.ab1   172 
  599  C UCD020F_E01_BE405604Td05P001C05P001C111F2_007.ab1   629 
  607    UCD020R_E01_BE405604Td05P001C05P001C111R2_007.ab1   592 
  619  C UCD020F_E01_BE405604Td05P001C05P001C111F2_007.ab1   609 
  631    UCD020R_E01_BE405604Td05P001C05P001C111R2_007.ab1   616 
  635  C UCD020F_E01_BE405604Td05P001C05P001C111F2_007.ab1   593 
Contig length: old 1230, new 1227

Contig length: old 1227, new 1227
New start: 0