No. words: 2264; after pruning: 2225


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 11.9 (1,1:5)  552  0.34 0.00 0.51  UCD010R_F01_BE405604Td06P001C05P001C111R1_005.ab1        5   595 (2)    UCD020R_F01_BE405604Td06P001C05P001C111R2_005.ab1        1   588 (283) *
Merge:(0)    0    0.0 10.1 (2,1:1214)  444  0.00 0.00 0.00  UCD020R_F01_BE405604Td06P001C05P001C111R2_005.ab1      415   871 (0)  C UCD020F_F01_BE405604Td06P001C05P001C111F2_005.ab1   (0)   796   340 *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 2       1        0

Offset
  0       2 
  2       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  598 nodes

 232 str. conn. components

Path
    1    UCD010R_F01_BE405604Td06P001C05P001C111R1_005.ab1     1 
   72    UCD020R_F01_BE405604Td06P001C05P001C111R2_005.ab1    68 
   76    UCD010R_F01_BE405604Td06P001C05P001C111R1_005.ab1    76 
   84    UCD020R_F01_BE405604Td06P001C05P001C111R2_005.ab1    80 
   88    UCD010R_F01_BE405604Td06P001C05P001C111R1_005.ab1    88 
  108    UCD020R_F01_BE405604Td06P001C05P001C111R2_005.ab1   104 
  116    UCD010R_F01_BE405604Td06P001C05P001C111R1_005.ab1   116 
  144    UCD020R_F01_BE405604Td06P001C05P001C111R2_005.ab1   140 
  148    UCD010R_F01_BE405604Td06P001C05P001C111R1_005.ab1   148 
  188    UCD020R_F01_BE405604Td06P001C05P001C111R2_005.ab1   184 
  192    UCD010R_F01_BE405604Td06P001C05P001C111R1_005.ab1   192 
  200    UCD020R_F01_BE405604Td06P001C05P001C111R2_005.ab1   196 
  208    UCD010R_F01_BE405604Td06P001C05P001C111R1_005.ab1   208 
  228    UCD020R_F01_BE405604Td06P001C05P001C111R2_005.ab1   224 
  456    UCD010R_F01_BE405604Td06P001C05P001C111R1_005.ab1   459 
  460    UCD020R_F01_BE405604Td06P001C05P001C111R2_005.ab1   456 
  464  C UCD020F_F01_BE405604Td06P001C05P001C111F2_005.ab1   751 
  468    UCD020R_F01_BE405604Td06P001C05P001C111R2_005.ab1   464 
  580  C UCD020F_F01_BE405604Td06P001C05P001C111F2_005.ab1   635 
Contig length: old 1215, new 1214

Contig length: old 1214, new 1214
New start: 0