No. words: 2404; after pruning: 2365


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.9 (1,1:12)  588  0.32 0.00 0.48  UCD010R_G01_BE405604Td07P001C05P001C111R1_003.ab1       12   640 (0)    UCD020R_G01_BE405604Td07P001C05P001C111R2_003.ab1        1   626 (251) *
Merge:(0)    0    0.0 12.6 (2,1:1206)  551  0.00 0.00 0.00  UCD020R_G01_BE405604Td07P001C05P001C111R2_003.ab1      309   877 (0)  C UCD020F_G01_BE405604Td07P001C05P001C111F2_003.ab1   (0)   887   319 *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       2 
  2       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  740 nodes

 298 str. conn. components

Path
    1    UCD010R_G01_BE405604Td07P001C05P001C111R1_003.ab1     1 
   27    UCD020R_G01_BE405604Td07P001C05P001C111R2_003.ab1    16 
   35    UCD010R_G01_BE405604Td07P001C05P001C111R1_003.ab1    35 
   63    UCD020R_G01_BE405604Td07P001C05P001C111R2_003.ab1    52 
   71    UCD010R_G01_BE405604Td07P001C05P001C111R1_003.ab1    71 
   79    UCD020R_G01_BE405604Td07P001C05P001C111R2_003.ab1    68 
   83    UCD010R_G01_BE405604Td07P001C05P001C111R1_003.ab1    83 
  195    UCD020R_G01_BE405604Td07P001C05P001C111R2_003.ab1   184 
  199    UCD010R_G01_BE405604Td07P001C05P001C111R1_003.ab1   199 
  207    UCD020R_G01_BE405604Td07P001C05P001C111R2_003.ab1   196 
  211    UCD010R_G01_BE405604Td07P001C05P001C111R1_003.ab1   211 
  247    UCD020R_G01_BE405604Td07P001C05P001C111R2_003.ab1   236 
  458    UCD010R_G01_BE405604Td07P001C05P001C111R1_003.ab1   461 
  474    UCD020R_G01_BE405604Td07P001C05P001C111R2_003.ab1   463 
  557  C UCD020F_G01_BE405604Td07P001C05P001C111F2_003.ab1   650 
  561    UCD020R_G01_BE405604Td07P001C05P001C111R2_003.ab1   550 
  578  C UCD020F_G01_BE405604Td07P001C05P001C111F2_003.ab1   629 
  602    UCD020R_G01_BE405604Td07P001C05P001C111R2_003.ab1   591 
  609  C UCD020F_G01_BE405604Td07P001C05P001C111F2_003.ab1   598 
  621    UCD020R_G01_BE405604Td07P001C05P001C111R2_003.ab1   610 
  622  C UCD020F_G01_BE405604Td07P001C05P001C111F2_003.ab1   585 
Contig length: old 1207, new 1206

Contig length: old 1206, new 1206
New start: 0