No. words: 2263; after pruning: 2211


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.9 (1,1:1190)  565  0.00 0.00 0.00  UCD020F_A02_BE405604Td09P001C05P001C111F2_016.ab1      303   884 (0)  C UCD020R_A02_BE405604Td09P001C05P001C111R2_016.ab1   (0)   889   308 *
Merge:(0)    0    0.0 8.4 (2,1:1197)  366  0.00 0.00 0.00  UCD020R_A02_BE405604Td09P001C05P001C111R2_016.ab1        1   379 (510)    UCD010R_A02_BE405604Td09P001C05P001C111R1_016.ab1        8   386 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    1      1
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       3 

Pass 4
             Gap  Score    
Merge:(0)    0   -0.1 -0.1 (3,1:-7)   70  2.11 4.21 0.00  UCD020F_A02_BE405604Td09P001C05P001C111F2_016.ab1        1    95 (789)    UCD010F_A02_BE405604Td09P001C05P001C111F1_016.ab1        6   104 (0) *

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.1       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    1
    3    1

Chimera merges: 


Contig 1:  546 nodes

 277 str. conn. components

Path
    1    UCD010F_A02_BE405604Td09P001C05P001C111F1_016.ab1     1 
   20    UCD020F_A02_BE405604Td09P001C05P001C111F2_016.ab1    14 
  628  C UCD020R_A02_BE405604Td09P001C05P001C111R2_016.ab1   570 
  640    UCD020F_A02_BE405604Td09P001C05P001C111F2_016.ab1   634 
  648  C UCD020R_A02_BE405604Td09P001C05P001C111R2_016.ab1   550 
  736    UCD020F_A02_BE405604Td09P001C05P001C111F2_016.ab1   730 
  744  C UCD020R_A02_BE405604Td09P001C05P001C111R2_016.ab1   454 
  930  C UCD010R_A02_BE405604Td09P001C05P001C111R1_016.ab1   275 
 1014  C UCD020R_A02_BE405604Td09P001C05P001C111R2_016.ab1   184 
 1018  C UCD010R_A02_BE405604Td09P001C05P001C111R1_016.ab1   187 
 1082  C UCD020R_A02_BE405604Td09P001C05P001C111R2_016.ab1   116 
 1086  C UCD010R_A02_BE405604Td09P001C05P001C111R1_016.ab1   119 
 1130  C UCD020R_A02_BE405604Td09P001C05P001C111R2_016.ab1    68 
 1138  C UCD010R_A02_BE405604Td09P001C05P001C111R1_016.ab1    67 
 1142  C UCD020R_A02_BE405604Td09P001C05P001C111R2_016.ab1    56 
 1150  C UCD010R_A02_BE405604Td09P001C05P001C111R1_016.ab1    55 
 1162  C UCD020R_A02_BE405604Td09P001C05P001C111R2_016.ab1    36 
 1178  C UCD010R_A02_BE405604Td09P001C05P001C111R1_016.ab1    27 
 1190  C UCD020R_A02_BE405604Td09P001C05P001C111R2_016.ab1     8 
 1194  C UCD010R_A02_BE405604Td09P001C05P001C111R1_016.ab1    11 
Contig length: old 1205, new 1204

Contig length: old 1204, new 1204
New start: 0