No. words: 2479; after pruning: 2440


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.0 (1,1:12)  626  1.02 0.00 0.44  UCD010R_B02_BE405604Td10P001C05P001C111R1_014.ab1       12   694 (0)    UCD020R_B02_BE405604Td10P001C05P001C111R2_014.ab1        1   680 (213) *
Merge:(0)    0    0.0 12.6 (2,1:1228)  552  0.00 0.00 0.00  UCD020R_B02_BE405604Td10P001C05P001C111R2_014.ab1      326   893 (0)  C UCD020F_B02_BE405604Td10P001C05P001C111F2_014.ab1   (0)   892   325 *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       2 
  2       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  754 nodes

 302 str. conn. components

Path
    1    UCD010R_B02_BE405604Td10P001C05P001C111R1_014.ab1     1 
   35    UCD020R_B02_BE405604Td10P001C05P001C111R2_014.ab1    24 
   51    UCD010R_B02_BE405604Td10P001C05P001C111R1_014.ab1    51 
  199    UCD020R_B02_BE405604Td10P001C05P001C111R2_014.ab1   188 
  211    UCD010R_B02_BE405604Td10P001C05P001C111R1_014.ab1   211 
  239    UCD020R_B02_BE405604Td10P001C05P001C111R2_014.ab1   228 
  247    UCD010R_B02_BE405604Td10P001C05P001C111R1_014.ab1   247 
  251    UCD020R_B02_BE405604Td10P001C05P001C111R2_014.ab1   240 
  259    UCD010R_B02_BE405604Td10P001C05P001C111R1_014.ab1   259 
  271    UCD020R_B02_BE405604Td10P001C05P001C111R2_014.ab1   260 
  471    UCD010R_B02_BE405604Td10P001C05P001C111R1_014.ab1   474 
  475    UCD020R_B02_BE405604Td10P001C05P001C111R2_014.ab1   464 
  561  C UCD020F_B02_BE405604Td10P001C05P001C111F2_014.ab1   668 
  563    UCD020R_B02_BE405604Td10P001C05P001C111R2_014.ab1   552 
  565  C UCD020F_B02_BE405604Td10P001C05P001C111F2_014.ab1   664 
  569    UCD020R_B02_BE405604Td10P001C05P001C111R2_014.ab1   558 
  591  C UCD020F_B02_BE405604Td10P001C05P001C111F2_014.ab1   638 
  603    UCD020R_B02_BE405604Td10P001C05P001C111R2_014.ab1   592 
  613  C UCD020F_B02_BE405604Td10P001C05P001C111F2_014.ab1   616 
  628    UCD020R_B02_BE405604Td10P001C05P001C111R2_014.ab1   617 
  629  C UCD020F_B02_BE405604Td10P001C05P001C111F2_014.ab1   600 
Contig length: old 1229, new 1228

Contig length: old 1228, new 1228
New start: 0