No. words: 1411; after pruning: 1385


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.7 (1,1:683)  659  0.00 0.15 0.15  UCD003F_A06_BE406277AT01P001E06E121F1_037.ab1        1   684 (31)  C UCD003R_A06_BE406277AT01P001E06E121R1_037.ab1   (12)   684     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  338 nodes

 171 str. conn. components

Path
    1  C UCD003R_A06_BE406277AT01P001E06E121R1_037.ab1   696 
   16    UCD003F_A06_BE406277AT01P001E06E121F1_037.ab1     4 
   28  C UCD003R_A06_BE406277AT01P001E06E121R1_037.ab1   669 
   38    UCD003F_A06_BE406277AT01P001E06E121F1_037.ab1    25 
  126  C UCD003R_A06_BE406277AT01P001E06E121R1_037.ab1   571 
  130    UCD003F_A06_BE406277AT01P001E06E121F1_037.ab1   117 
  150  C UCD003R_A06_BE406277AT01P001E06E121R1_037.ab1   547 
  154    UCD003F_A06_BE406277AT01P001E06E121F1_037.ab1   141 
  234  C UCD003R_A06_BE406277AT01P001E06E121R1_037.ab1   463 
  238    UCD003F_A06_BE406277AT01P001E06E121F1_037.ab1   225 
  254  C UCD003R_A06_BE406277AT01P001E06E121R1_037.ab1   443 
  258    UCD003F_A06_BE406277AT01P001E06E121F1_037.ab1   245 
  394  C UCD003R_A06_BE406277AT01P001E06E121R1_037.ab1   303 
  402    UCD003F_A06_BE406277AT01P001E06E121F1_037.ab1   389 
  418  C UCD003R_A06_BE406277AT01P001E06E121R1_037.ab1   279 
  498    UCD003F_A06_BE406277AT01P001E06E121F1_037.ab1   485 
  502  C UCD003R_A06_BE406277AT01P001E06E121R1_037.ab1   195 
  514    UCD003F_A06_BE406277AT01P001E06E121F1_037.ab1   501 
  518  C UCD003R_A06_BE406277AT01P001E06E121R1_037.ab1   179 
  538    UCD003F_A06_BE406277AT01P001E06E121F1_037.ab1   525 
  550  C UCD003R_A06_BE406277AT01P001E06E121R1_037.ab1   147 
  586    UCD003F_A06_BE406277AT01P001E06E121F1_037.ab1   573 
  590  C UCD003R_A06_BE406277AT01P001E06E121R1_037.ab1   107 
  678    UCD003F_A06_BE406277AT01P001E06E121F1_037.ab1   665 
Contig length: old 727, new 728

Contig length: old 728, new 728
New start: 0