No. words: 1396; after pruning: 1370


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.4 (1,1:603)  573  0.17 0.00 0.33  UCD003F_B06_BE406277AT02P001E06E121F1_045.ab1        1   605 (0)  C UCD003R_B06_BE406277AT02P001E06E121R1_045.ab1   (188)   603     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  294 nodes

 149 str. conn. components

Path
    1  C UCD003R_B06_BE406277AT02P001E06E121R1_045.ab1   791 
  192    UCD003F_B06_BE406277AT02P001E06E121F1_045.ab1     4 
  364  C UCD003R_B06_BE406277AT02P001E06E121R1_045.ab1   428 
  368    UCD003F_B06_BE406277AT02P001E06E121F1_045.ab1   180 
  400  C UCD003R_B06_BE406277AT02P001E06E121R1_045.ab1   392 
  404    UCD003F_B06_BE406277AT02P001E06E121F1_045.ab1   216 
  424  C UCD003R_B06_BE406277AT02P001E06E121R1_045.ab1   368 
  428    UCD003F_B06_BE406277AT02P001E06E121F1_045.ab1   240 
  444  C UCD003R_B06_BE406277AT02P001E06E121R1_045.ab1   348 
  448    UCD003F_B06_BE406277AT02P001E06E121F1_045.ab1   260 
  452  C UCD003R_B06_BE406277AT02P001E06E121R1_045.ab1   340 
  464    UCD003F_B06_BE406277AT02P001E06E121F1_045.ab1   276 
  476  C UCD003R_B06_BE406277AT02P001E06E121R1_045.ab1   316 
  488    UCD003F_B06_BE406277AT02P001E06E121F1_045.ab1   300 
  500  C UCD003R_B06_BE406277AT02P001E06E121R1_045.ab1   292 
  584    UCD003F_B06_BE406277AT02P001E06E121F1_045.ab1   396 
  588  C UCD003R_B06_BE406277AT02P001E06E121R1_045.ab1   204 
  771    UCD003F_B06_BE406277AT02P001E06E121F1_045.ab1   583 
Contig length: old 792, new 793

Contig length: old 793, new 793
New start: 0