No. words: 1470; after pruning: 1444


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 12.2 (1,1:762)  630  0.15 0.00 0.30  UCD007F_D12_BE406277AT02P012E06P001E121F1_090.ab1      100   765 (38)  C UCD007R_D12_BE406277AT02P012E06P001E121R1_090.ab1   (3)   664     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  326 nodes

 165 str. conn. components

Path
    1    UCD007F_D12_BE406277AT02P012E06P001E121F1_090.ab1     1 
  273  C UCD007R_D12_BE406277AT02P012E06P001E121R1_090.ab1   491 
  277    UCD007F_D12_BE406277AT02P012E06P001E121F1_090.ab1   277 
  333  C UCD007R_D12_BE406277AT02P012E06P001E121R1_090.ab1   431 
  341    UCD007F_D12_BE406277AT02P012E06P001E121F1_090.ab1   341 
  369  C UCD007R_D12_BE406277AT02P012E06P001E121R1_090.ab1   395 
  389    UCD007F_D12_BE406277AT02P012E06P001E121F1_090.ab1   389 
  397  C UCD007R_D12_BE406277AT02P012E06P001E121R1_090.ab1   367 
  409    UCD007F_D12_BE406277AT02P012E06P001E121F1_090.ab1   409 
  413  C UCD007R_D12_BE406277AT02P012E06P001E121R1_090.ab1   351 
  433    UCD007F_D12_BE406277AT02P012E06P001E121F1_090.ab1   433 
  437  C UCD007R_D12_BE406277AT02P012E06P001E121R1_090.ab1   327 
  441    UCD007F_D12_BE406277AT02P012E06P001E121F1_090.ab1   441 
  453  C UCD007R_D12_BE406277AT02P012E06P001E121R1_090.ab1   311 
  493    UCD007F_D12_BE406277AT02P012E06P001E121F1_090.ab1   493 
  497  C UCD007R_D12_BE406277AT02P012E06P001E121R1_090.ab1   267 
  733    UCD007F_D12_BE406277AT02P012E06P001E121F1_090.ab1   733 
  737  C UCD007R_D12_BE406277AT02P012E06P001E121R1_090.ab1    27 
  749    UCD007F_D12_BE406277AT02P012E06P001E121F1_090.ab1   749 
Contig length: old 803, new 803

Contig length: old 803, new 803
New start: 0