No. words: 1657; after pruning: 1631


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.5 (1,1:831)  789  0.00 0.00 0.12  UCD003F_D07_BE406277LD08P001E06E121F1_058.ab1        1   815 (0)  C UCD003R_D07_BE406277LD08P001E06E121R1_058.ab1   (11)   831    18 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  406 nodes

 205 str. conn. components

Path
    1  C UCD003R_D07_BE406277LD08P001E06E121R1_058.ab1   842 
   19    UCD003F_D07_BE406277LD08P001E06E121F1_058.ab1     8 
  351  C UCD003R_D07_BE406277LD08P001E06E121R1_058.ab1   492 
  355    UCD003F_D07_BE406277LD08P001E06E121F1_058.ab1   344 
  395  C UCD003R_D07_BE406277LD08P001E06E121R1_058.ab1   448 
  403    UCD003F_D07_BE406277LD08P001E06E121F1_058.ab1   392 
  431  C UCD003R_D07_BE406277LD08P001E06E121R1_058.ab1   412 
  435    UCD003F_D07_BE406277LD08P001E06E121F1_058.ab1   424 
  459  C UCD003R_D07_BE406277LD08P001E06E121R1_058.ab1   384 
  495    UCD003F_D07_BE406277LD08P001E06E121F1_058.ab1   484 
  499  C UCD003R_D07_BE406277LD08P001E06E121R1_058.ab1   344 
  511    UCD003F_D07_BE406277LD08P001E06E121F1_058.ab1   500 
  519  C UCD003R_D07_BE406277LD08P001E06E121R1_058.ab1   324 
  527    UCD003F_D07_BE406277LD08P001E06E121F1_058.ab1   516 
  535  C UCD003R_D07_BE406277LD08P001E06E121R1_058.ab1   308 
  803    UCD003F_D07_BE406277LD08P001E06E121F1_058.ab1   792 
  821  C UCD003R_D07_BE406277LD08P001E06E121R1_058.ab1    23 
Contig length: old 842, new 843

Contig length: old 843, new 843
New start: 0