No. words: 1533; after pruning: 1467


Histogram of relative pair offsets, for read pairs with multiple alignments:
61     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.6 (1,1:970)  474  3.39 0.18 0.18  UCD003F_H05_BE406277TU02P001E06E121F1_044.ab1      223   783 (0)  C UCD003R_H05_BE406277TU02P001E06E121R1_044.ab1   (1)   749   189 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1    UCD003F_H05_BE406277TU02P001E06E121F1_044.ab1     1 
  242  C UCD003R_H05_BE406277TU02P001E06E121R1_044.ab1   730 
  246    UCD003F_H05_BE406277TU02P001E06E121F1_044.ab1   246 
  263  C UCD003R_H05_BE406277TU02P001E06E121R1_044.ab1   709 
  271    UCD003F_H05_BE406277TU02P001E06E121F1_044.ab1   271 
  468  C UCD003R_H05_BE406277TU02P001E06E121R1_044.ab1   504 
  472    UCD003F_H05_BE406277TU02P001E06E121F1_044.ab1   472 
  484  C UCD003R_H05_BE406277TU02P001E06E121R1_044.ab1   488 
  488    UCD003F_H05_BE406277TU02P001E06E121F1_044.ab1   488 
  492  C UCD003R_H05_BE406277TU02P001E06E121R1_044.ab1   480 
  496    UCD003F_H05_BE406277TU02P001E06E121F1_044.ab1   496 
  516  C UCD003R_H05_BE406277TU02P001E06E121R1_044.ab1   456 
  520    UCD003F_H05_BE406277TU02P001E06E121F1_044.ab1   520 
  552  C UCD003R_H05_BE406277TU02P001E06E121R1_044.ab1   420 
  560    UCD003F_H05_BE406277TU02P001E06E121F1_044.ab1   560 
  564  C UCD003R_H05_BE406277TU02P001E06E121R1_044.ab1   408 
  568    UCD003F_H05_BE406277TU02P001E06E121F1_044.ab1   568 
  580  C UCD003R_H05_BE406277TU02P001E06E121R1_044.ab1   392 
  708    UCD003F_H05_BE406277TU02P001E06E121F1_044.ab1   708 
  776  C UCD003R_H05_BE406277TU02P001E06E121R1_044.ab1   196 
Contig length: old 971, new 971

Contig length: old 971, new 970
New start: 0 
D Change at: 738; seg lengths: entry 0, contig 1