No. words: 1586; after pruning: 1560


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.4 (1,1:752)  730  0.13 0.00 0.13  UCD005F_H06_BE406908AS02P012F05F111F1_034.ab1        1   753 (41)  C UCD005R_H06_BE406908AS02P012F05F111R1_034.ab1   (40)   752     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  372 nodes

 188 str. conn. components

Path
    1  C UCD005R_H06_BE406908AS02P012F05F111R1_034.ab1   792 
   44    UCD005F_H06_BE406908AS02P012F05F111F1_034.ab1     4 
   96  C UCD005R_H06_BE406908AS02P012F05F111R1_034.ab1   697 
  100    UCD005F_H06_BE406908AS02P012F05F111F1_034.ab1    60 
  476  C UCD005R_H06_BE406908AS02P012F05F111R1_034.ab1   317 
  788    UCD005F_H06_BE406908AS02P012F05F111F1_034.ab1   749 
Contig length: old 833, new 833

Contig length: old 833, new 834
New start: 0 
I Change at: 786; seg lengths: entry 1, contig 0