No. words: 1575; after pruning: 1549


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.4 (1,1:736)  722  0.00 0.00 0.00  UCD005F_A07_BE406908AT01P012F05F111F1_063.ab1        1   737 (56)  C UCD005R_A07_BE406908AT01P012F05F111R1_063.ab1   (45)   737     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  366 nodes

 185 str. conn. components

Path
    1  C UCD005R_A07_BE406908AT01P012F05F111R1_063.ab1   782 
   53    UCD005F_A07_BE406908AT01P012F05F111F1_063.ab1     8 
   69  C UCD005R_A07_BE406908AT01P012F05F111R1_063.ab1   714 
   77    UCD005F_A07_BE406908AT01P012F05F111F1_063.ab1    32 
  149  C UCD005R_A07_BE406908AT01P012F05F111R1_063.ab1   634 
  153    UCD005F_A07_BE406908AT01P012F05F111F1_063.ab1   108 
  305  C UCD005R_A07_BE406908AT01P012F05F111R1_063.ab1   478 
  601    UCD005F_A07_BE406908AT01P012F05F111F1_063.ab1   556 
  605  C UCD005R_A07_BE406908AT01P012F05F111R1_063.ab1   178 
  733    UCD005F_A07_BE406908AT01P012F05F111F1_063.ab1   688 
  737  C UCD005R_A07_BE406908AT01P012F05F111R1_063.ab1    46 
  769    UCD005F_A07_BE406908AT01P012F05F111F1_063.ab1   724 
Contig length: old 838, new 838

Contig length: old 838, new 838
New start: 0